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MaxBin: an automated binning method to recover individual genomes from metagenomes using an expectation-maximization algorithm
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PlantSEED enables automated annotation and reconstruction of plant primary metabolism with improved compartmentalization and comparative consistency
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Automated group assignment in large phylogenetic trees using GRUNT: GRouping, Ungrouping, Naming Tool
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A Plant Root Atlas for Tracking Developmental Trajectories
… zu Berlin   has developed an atlas that maps gene expression patterns in the  Arabidopsis root, profiling nearly … Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab). “This represents the largest … with resulting reports and a  perspective article . Publication: Shahan R et al.  A single cell Arabidopsis root …
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SPRUCE-ing Up Science
… former JGI intern is now applying his internship lessons on presentations to peatlands Travis Lawrence sits in his … complex things … they really just help get your point across as quickly as possible,” he said. After years of … fine tune his approach. “I got a lot of that from Zhong.”   Publication: Carrell AA et al. Habitat-adapted microbial …
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Advances on genomics, biology, ecology and evolution of Brachypodium, a bridging model grass system for cereals and biofuel grasses
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Self-Buffering system for Cost-Effective production of lactic acid from glucose and xylose using Acid-Tolerant Issatchenkia orientalis
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The Dynamic Influence of Subsurface Geological Processes on the Assembly and Diversification of Thermophilic Microbial Communities in Continental Hydrothermal Systems
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Bright luminescence of Vibrio fischeri aconitase mutants reveals a connection between citrate and the Gac/Csr regulatory system
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A Community Resource for Secondary Metabolite Researchers
The Secondary Metabolism Collaboratory encourages user engagement. The Science In addition to the core set of "primary metabolites"—chemical compounds shared by most … more than 13 million BGCs in the catalog at the time of publication, it is the largest repository of BGC sequence …
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Model Fern Reveals Insight into DNA Thievery in Ferns
… of ferns alive today. Boasting adaptations in order to protect themselves from environmental stresses, ferns’ … in plant research laboratories and plant biology courses across the globe for insights into reproductive, space and … Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab) took on the Open Green Genome …
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Designer DNA: JGI Helps Users Blaze New Biosynthetic Pathways
… research enabled by the JGI DNA Synthesis Science Program. Fashioning DNA outside a cell is key to … more than 10 papers, including two Nature Plants publications, in five years, have come out of the … PI on this project. “I view the program as an excellent platform to build collaborative research initiatives.” Yasuo …
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