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A User-Centered Approach to Accessing JGI Data
… JGI Data Portal (https://data.jgi.doe.gov/) launched last year, it was only accessible through the plant portal  … Policy requires that users know about the FY Funding Year, and the publication status in addition to the public/private status. … Department of Energy Joint Genome Institute, a DOE Office of Science User Facility  located at Lawrence Berkeley …
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Frequently Asked Questions: Proposal Submission
… proposals are subject to JGI policies on Data Release and Publication .   Except for applicants to the CSP New … You can also contact [email protected] for advice!  … questions, we encourage you to contact us in advance for advice. … National Parks USDA Animal and Plant Health Inspection Service permits US Fish and Wildlife permits These examples may …
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Fungal Friends or Foes in Plant Roots
… bioenergy feedstock crops. Summary A plant is like an office building, its roots are akin to the ground floor lobby. … but they’re not always immediately apparent. Similarly, the microbes found in plant roots may have unknown roles. Some … the collection. The team then compared this dataset against nearly 80 previously published fungal genomes on the JGI …
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Mining Metagenomes for Cas Proteins
… of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility. The sequences were then … to be unearthed in sequencing and analyzing uncultivated microbes. Summary The CRISPR-Cas system is an immune … by incorporating short sequences from infecting viruses and phages. In the event of a new infection, the microbes use …
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Depth-discrete metagenomics reveals the roles of microbes in biogeochemical cycling in the tropical freshwater Lake Tanganyika
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Metagenomic Insights into the Uncultured Diversity and Physiology of Microbes in Four Hypersaline Soda Lake Brines
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A programmable droplet-based microfluidic device applied to multiparameter analysis of single microbes and microbial communities
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Plant Program
… deep learning algorithms for gene annotation and protein folding models, to improve the accuracy of functional … methods, and delivering scalable transformation services through a user-facility model.  doi: 10.2172/3014442 … the ability to discover syntenic orthologs, generate publication quality graphics and explore pangenome views of …
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Programs & Platform Leads
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Trent Northen
… to link genomes with environments to understand how webs of microbes cycle carbon and sustain biomes via the development … of Science (AAAS), 2022&2023 Biosciences Inventor of the Year 2019 R&D100 Award 2016 Berkeley Lab Director … Selected Publications …
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JGI@25: Expanding Metagenomics to Capture Viral Diversity
… of course, the cells of other organisms. As they infect microbes like bacteria, algae and protists, all kinds of … the number of known viral genes by a factor of 16. The same year, the JGI expanded its existing Integrated Microbial … inform on how this can be done” Roux said. And in just 6 years, IMG/VR has built a foundation for finding more of …
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Time‐series metatranscriptomes reveal conserved patterns between phototrophic and heterotrophic microbes in diverse freshwater systems
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