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Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data
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OpenMSI Arrayed Analysis Toolkit: Analyzing Spatially Defined Samples Using Mass Spectrometry Imaging
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Arabidopsis Root Microbiome Microfluidic (ARMM) Device for Imaging Bacterial Colonization and Morphogenesis of Arabidopsis Roots
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Marine Microbe Contains Multitudes
… help regulate the global carbon cycle — fixing, transforming, and respiring carbon. Understanding the metabolisms … of SAR324 cells and their gene expression, the team then sequenced community genomes and expressed gene transcripts … cells of the uncultivated SAR324. The constellation of data gave the team unprecedented resolution to study the …
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JGI Pitches 2022 Visiting Faculty Program Collaborations
…   On November 3, 2021, the JGI and the Workforce Development & Education department of … . The VFP is a summer professional development program for current faculty. Applying faculty members may invite up …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… shed more light on microbial communities than ever before — especially with the prospect of meta-analyses boosted … — JGI researchers and collaborators work to create FAIR datasets to maximize returns on these advances. Over the … a  Minimum Information for any Stable Isotope Probing Sequence (MISIP) . They differentiate between required …
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New Vision, New Mission, New Plan: The JGI’s Next Five Years
New 5-year strategic plan outlines how the JGI will advance the bioeconomy, leveraging partnerships to advance foundational science, creating opportunities for the global research community. The U.S. Department of … a vast range of organisms and ecosystems. These kinds of data could open opportunities along multiple avenues, …
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JGI Workshop at 2025 Aquatic Sciences Meeting
Details forthcoming at ASLO 2025 Aquatic Sciences Meeting …
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Building Sphagnum Genomic Resources
Sphagnome data would enable researchers’ insights on their potential … carbon cycling impact.   The Science Enabled by the JGI’s Community Science Program (CSP), researchers are … model system focused on carbon cycling studies, rather than for food or fuel applications. The Impact Sphagnum’s impact …
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DOE JGI Metagenome Workflow
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2024 Progress Report
Biology Knowledgebase (KBase), the National Microbiome Data Collaborative (NMDC), and Berkeley Lab Biosciences Area … also co-located in the IGB. Vision  Lead genomic innovation for a sustainable bioeconomy. Mission  As a U.S. Department … 39,870 projects in FY24 We generated 871 Terabases of sequence We synthesized 9.7 Megabases of DNA We processed …
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Elucidating Drought-Tolerance Mechanisms in Plant Roots through 1H NMR Metabolomics in Parallel with MALDI-MS, and NanoSIMS Imaging Techniques
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