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Interdisciplinary delegation from the University of Duisburg-Essen explores collaborative opportunities with Lawrence Berkeley National Laboratory
… the University of Duisburg-Essen in Germany in 2024 and 2025.  Participants from the UDE were Alexander Probst, Stephan …
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What Happens To a Rainforest When You Dial Up Drought?
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A Collaboration to Improve Plant Genome Annotations Across Species
… Gene Atlas in  Nucleic Acids Research . The project spans 15 years and involves more than 17 research groups. The team … targets for plant improvement. Surprisingly, about 16 to 56 percent of plant genes are poorly characterized, meaning … are looking at 18 different species, which included over 2000 RNA Seq libraries. As I previously mentioned, this is an …
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JGI@25 RECAP: 2022 Annual Meeting features historical perspectives on JGI’s 25 years
… As part of the JGI’s 25th anniversary celebration, the 2022 Annual Meeting … the Department of Energy (DOE) colleagues. “At that time (1986) 98% of the human genome was thought to be junk DNA, so … in simultaneously sequencing the human genome.  By 2000, a drafted human genome was produced by a joint effort …
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DAP-seq Drives Robust Mapping of Gene Regulation
… falling. As  published online in  Nature Plants  on July 15, researchers have developed multiplexed assays — … grasses to broccoli and trees like poplar, spanning about 150 million years of evolution,” said Leo Baumgart, first … have propelled the creation of a vast resource: nearly 3,000 genome-wide binding maps for 360 transcription factors …
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Tina Clarke
… Ms. Clarke joined the Lab in 2007 as the Sr. Human Resources Division Partner for the … June 2017 –  present Sr. Compensation Analyst, May 2015 –  present Joint Genome Institute (JGI) HR Partner, June … (Sybase Acquired Company), Pacheco, CA HR Generalist, 1999 – 2000 TriNet VCO, San Leandro, CA HR Generalist  1997 – …
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Doubling Down on Known Protein Families
… microbes. Harnessing the collective power of more than 26,000 microbiome datasets, all accessible through the publicly … we’ve already defined.  “A huge percentage — around 30–50% of the protein families that we knew so far — still does … more metagenomes, some of the clusters that have currently 50 members or more will grow to 100 members or more as well. …
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Climate Change Threatens Base of Polar Oceans’ Bountiful Food Webs
… waters that have an average surface temperature of about 58° Fahrenheit (14° Celsius) — a cool intermediate to the ocean’s extremes of about 28° and 97° Fahrenheit. “The study authors point to this fundamental … from the Intergovernmental Panel on Climate Change (IPCC) 5th Assessment Report to predict where and how fast the 14° …
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A Plant Root Atlas for Tracking Developmental Trajectories
… patterns in the  Arabidopsis root, profiling nearly 100,000 single root cells and combining the information with … by then-Biosciences scientist Diane Dickel in 2017. In 2019, plant single-cell methods were officially called out as …
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Maureen Berg
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Exploring Possibilities: 2022 JGI-UC Merced Interns
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Kjiersten Fagnan
… Storage and Analysis, 2018, pp. 717-730, doi: 10.1109/SC.2018.00060. Wood-Charlson, E.M., Anubhav, Auberry, D. et al. The … Microbiol 18, 313–314 (2020). https://doi.org/10.1038/s41579-020-0377-0 S. Pau and J.B. Bell and A.S. Almgren and …
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