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iPHoP: A Matchmaker for Phages and their Hosts
… to generate a matrix of data points.  Applied to 216,015 high-quality virus sequences in the IMG/VR database, the … Program awarded under UC-DOE Prime Contract DE-AC02-05CH11231. The work conducted by the U.S. Department of … Department of Energy operated under Contract No. DE-AC02-05CH11231 (SR, APC, SN).  …
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JGI-UC Merced Interns Share Their 2021 Experiences
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JGI announces 2024 Functional Genomics awardees
… are accepted year-round; the next deadline is Jan. 30, 2025. …
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Fishing for Novel Cellulose Degraders
User Facility, is supported under Contract No. DE-AC02-05CH11231. The work was supported by a JGI Director’s Science … and Environmental Research under contract DE-FC02-07ER64494. EG is supported by the NIGMS Biotechnology Training Program (NIH 5 T32 GM008349) at the University of Wisconsin – Madison. This work …
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Emiley Eloe-Fadrosh
… microbiome research community standards. Nat Microbiol . 8(5):751-753. Nayfach A, et al. 2021. A genomic catalogue of … science. Rev. Microbiol. 18:313-314. Roux S, et al. 2019. Cryptic inoviruses are pervasive in bacteria and archaea … ZoBell Fellowship, Scripps Institution of Oceanography, 2008 Lewis and Clark Field Scholar, NASA/American …
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Enlarging Windows into Understanding Gene Functions
Technologies Group. In an article published November 25, 2021 in Nature Methods , JGI researchers led by co-first …
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Identifying the Microbial Cleanup Crew at a Superfund Site
… involved in a bioremediation effort. The Science In 1999, the Environmental Protection Agency declared the North … type of food that was in the contaminated aquifer in 2007 to achieve this goal. In less than four years, parts of … the ERD process.  … The work (proposal:  10.46936/10.25585/60000717 ) conducted by the U.S. Department of Energy …
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You Can Move, But You Can’t Hide
JGI’s  IMG Virus Resource (IMG/VR) , now with more than 15 million viral genomes. It was also key to developing the … Plasmid Resource (IMG/PR) , which currently has more than 700,000 plasmids from genomes, metagenomes and … Office of Biological and Environmental Research (BER) (89233218CNA000001 to L.A.N.L., DE-AC05-00OR22725 to O.R.N.L., …
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For the Tiniest Archaea, A Genomic Switch of Friend or Foe
… from their own genomes. One of these systems, the CRISPR-Cas9 system, is a powerful tool in gene editing, but many other … Frontiers Group, the National Science Foundation (MCB-1244557 to J.A.D.) and the Lawrence Berkeley National … to J.F.B.). The work ( proposal doi: 10.46936/10.25585/60000800 ) conducted by the U.S. Department of Energy Joint …
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The JGI announces 2024 awardees for our Community Science Program annual call
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A Natural Mechanism Can Turbocharge Viral Evolution
… organism’s fitness. Moreover, the discovery of more than 30,000 DGRs in this analysis, a 20-fold increase over what was … the U.S. Department of Energy under contract no. DE-AC02-05CH11231. This research used resources of the National … Science User Facility operated under Contract No. DE-AC02-05CH11231. B.G.P. was supported by the Marine Biological …
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Engagement Webinar: How to Successfully Apply for a CSP Proposal
The only requirements are that you stay under the 500-gigabase cap and that you don’t request outside of the … exploratory small proposal that might not max out the whole 500 gigabases? Is it better to try to reach that maximum …
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