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Complete genome sequence of Oceanithermus profundus type strain (506T)
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Insights of biomass recalcitrance in natural Populus trichocarpa variants for biomass conversion
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The Case for Conservation
… moss Ceratodon purpureus is a short plant with a complex genome . Now, high-quality reference genome sequences of the … and at HudsonAlpha. As the team discussed in a JGI podcast episode about the work, the effort to fully sequence the … of satisfaction. … This work was supported by NSF DEB-1541005 and start-up funds from UF to S.F.M.; microMORPH …
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… collaborated with the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … Annotation Group. Many of these bacterial and archaeal genome sequences have been generated using techniques that … combined with nearly 5,000 publicly available ones and 1,100 metagenome-assembled genomes (MAGs) reconstructed from …
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JGI@25: Roots of a Mutualist Relationship
… energy and environmental challenges. In March 2008, the genome sequence of the forest fungus Laccaria bicolor was … a symbiotic relationship with the poplar, a JGI Flagship Genome and the first tree to have its genome sequenced. … the fungal portal MycoCosm, many sequenced through the JGI 1000 Fungal Genomes Project.       Francis Martin on the …
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Tracking the Origins of Methane-Producing Microbes
Methane-producing archaea are estimated to produce 500 million tons of methane a year, which is over half the … Biohub, and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science user … and Verstraetearchaeota lineages. The archaeal genome was detected in samples collected by Stephen Quake’s …
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A Collaboration to Improve Plant Genome Annotations Across Species
To provide broad plant genomic capabilities, the DOE Joint Genome Institute works in partnership with the HudsonAlpha … Institute for Biotechnology, which specializes in genome improvement for plants. As part of that partnership, … Avinash: In the initial planning phase, there were about 10 groups that came together to standardize the experimental …
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Comparative transcriptomics as a guide to natural product discovery and biosynthetic gene cluster functionality
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Catabolic repression in early-diverging anaerobic fungi is partially mediated by natural antisense transcripts
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Genetic determinants of switchgrass-root-associated microbiota in field sites spanning its natural range
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Len Pennacchio
In 2003, Dr. Pennacchio joined the DOE Joint Genome Institute and has focused on applying … joint appointments as a Deputy Director at the DOE Joint Genome Institute, Senior Scientist at Lawrence Berkeley … vast landscape of gene regulatory sequences in the human genome. Understanding how variation in regulatory sequences …
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Genome sequence of the Lebeckia ambigua-nodulating “Burkholderia sprentiae” strain WSM5005T
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