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Climate-driven succession in marine microbiome biodiversity and biogeochemical function
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Metabolomics Program
… Program works to uncover the roles of small molecules in biological systems, linking them with genomic data to enhance our understanding of … The Metabolomics Program is focused on understanding the critical roles of metabolites in living systems, particularly as they relate to DOE …
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DOE JGI Metagenome Workflow
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Terabase-scale metagenome coassembly with MetaHipMer
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ClaMS: A Classifier for Metagenomic Sequences
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Polar Phytoplankton Need Zinc to Cope with the Cold
… rely on dissolved zinc to photosynthesize. Thomas Mock, a marine microbiologist at the University of East Anglia, … temperatures characteristic for polar oceans. In this study, they’ve cracked open the genome of another polar … latitudes from pole to pole, using metatranscriptome and metagenome data from the JGI. With multiple threads of …
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The Case for Conservation
… How sex chromosomes “older than dinosaurs” could help improve crop yields.  The Science The … sequences of the male and female plants, each representing a single set of chromosomes, are available. The genome … four times the size of the next largest chromosome. As the study first author Carey put it, these sex chromosomes first …
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VISTA Region Viewer (RViewer)—a computational system for prioritizing genomic intervals for biomedical studies
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Fungal ecological strategies reflected in gene transcription ‐ a case study of two litter decomposers
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Ecosystem Fabrication (EcoFAB) Protocols for The Construction of Laboratory Ecosystems Designed to Study Plant-microbe Interactions
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Metabolomics
… strengthens -omics technologies at the JGI by identifying the actual molecules present in an environment that influence system behavior.  Through … light on nutrient cycling, and leads to the discovery of new molecules and pathways. The JGI Metabolomics Platform …
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Partnerships: Myco-Ed
… Research Experience (CURE) that consists of coordinated hands-on experiments across fungal biology teaching labs. The purpose of the program is to: train students … empower students through isolation and genome sequencing of new fungal species.  Students collect fungi, sterilize …
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