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Uncovering Novel Genomes from Earth’s Microbiomes
Large-scale comparative analysis leads to identification of biosynthetic gene clusters for novel secondary … genomes can’t be sequenced using traditional approaches. Identifying and characterizing the planet’s microbial … out to more than 200 researchers around the world in accordance with the JGI data use policy. “I felt it is …
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A Revamped Amplification Method that Enables Nearly Complete Single-Cell Genomes
… from single cells. The Science Studying the  genomes of microorganisms is incredibly useful for understanding the microbiome of the earth, but most species do not grow easily in the lab. To access the genomes of uncultured  microbes , scientists …
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Toasting to the 2020 JGI-UC Merced Summer Internship Program
UC Merced students and their JGI mentors toasted to the end of a nine-week virtual internship. The celebration was … final presentations attended by more than 75 JGI staff. According to Axel Visel and Zhong Wang, founders of this internship program, this was the largest turnout for …
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2024 Progress Report
… for a sustainable bioeconomy. Mission  As a U.S. Department of Energy Office of Science user facility, we provide advanced genomic … with a record output of products, making data easier to access and use, and by investing in the latest advanced …
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Engagement Webinar: Harnessing JGI’s Metabolomics Capabilities
… (CSP) . This includes mass spectrometry-based measurements of primary and secondary metabolites from plants, … The webinar featured  Trent Northen and Ben Bowen of the  JGI Metabolomics Program , along with Jenny … A: Anyone from anywhere around the world can apply to access the JGI’s resources. Q:  Where can I get information …
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Toward More Efficient Artificial Photosynthesis
… (MPI) for Terrestrial Microbiology and the University of Bordeaux have developed a platform that mimics … composition variants. Summary In the  May 8, 2020 issue of  Science , a team led by Tobias Erb, director of the MPI for Terrestrial Microbiology, successfully combined synthetic biology and microfluidics to …
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When “The Blob” Made It Hotter Under the Water
… impact on marine microbial communities. The Science A team of researchers tracked the impact of a large-scale heatwave event in the ocean known as “The Blob.” The event was recorded during a long-term study of microbial communities in the northeastern subarctic …
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Accelerating Metagenomics Discoveries with Deep Learning
… insights from metagenomic data. In deep learning, a branch of machine learning, data is passed through algorithms … into multiple interconnected layers. The architecture of these algorithms, inspired by communication networks … found in nature, allows machines to “learn” features. State of the art algorithms can perform astonishing degrees of …
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A One-Stop Shop for Analyzing Algal Genomes
… data portal allows anyone to freely investigate the genes of more than 100 algae. The Science Interested in the genomes of algae? You now have one place where you can browse the … Energy under Agreements NL0032266. Funding for open access charge: DOE [DE-AC02-05CH11231]. … Algal Genomes on …
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A One-Stop Shop for Analyzing Algal Genomes
… data portal allows anyone to freely investigate the genes of more than 100 algae. The Science Interested in the genomes of algae? You now have one place where you can browse the genetic blueprints of these photosynthetic organisms. PhycoCosm is one of the …
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Plotting a Model for Virus-Host Warfare Deep Below Ground
Science Altiarchaea are carbon-fixing microbes and targets of multiple viruses in Earth’s deep subsurface. They are abundant representatives of deep subsurface ecosystems. A team of researchers … to break through, finally resorting to explosives to succeed. Altiarchaea, like the Hornburg, have a history of …
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Viruses Reprogram Cells into Different Virocells
… from The Ohio State University and the University of Michigan studying how virus infections cause significant … metabolic changes they’ve undergone. The Impact The number of microbes in, on, and around the planet is an astronomical … resulting virocells, to better represent how infections occur in natural settings. … A portion of this research was …
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