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David Goodstein
With a background in experimental and computational surface physics, Dr. … group also develops and maintains the Phytozome Plant Genomics web portal. … BS in Physics, New York University, … et al., 2012. Phytozome: a comparative platform for green plant genomics.      Nucleic Acids Research 40, D1178. …
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Natural Prodcast Episode 5: Brad Moore
… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s … the mid-late ’80s. And at that time, you know, it’s before genomics existed. This is before we’re even thinking of … in some cases where there’s very little even genomic information there, as well. So I think it’s a way to sort of …
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Natural Prodcast Episode 15: Katherine Duncan
… natural products data that there is and putting things, coalescing them, so that we can really make discoveries. And … to sort of compare, conceptually, that data with genomics and the kind of things that I do with genome … Kate Duncan: And somehow, you have to make sense of that information. So the cool thing about molecular networking is– …
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The complete mitochondrial genome of the conifer needle endophyte, Phialocephala scopiformis DAOMC 229536 confirms evolutionary division within the fungal Phialocephala fortinii s.l. – Acephala appalanata species complex
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Researching and Solving Real-World Problems with the 2023 JGI-UC Merced Interns
For the first time in several years, the DOE Joint Genome Institute hosted … Kamel, A Comparative Analysis of Metabolic Pathways in Fungal Pathogens Shayna Bennett and mentor Robert Bowers, … huge amounts of data. I was excited to work on fungal genomics and the fact that I got to do a project involving …
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Making a Lichen Together
The Science The humble lichen is a superorganism: one being that is actually comprised of two (or more) … in the lichen lifestyle. The team’s results appear in  BMC Genomics . To explore the genomes, Armaleo and colleagues worked with Igor Grigoriev, the Fungal & Algal Program lead at the US Department of Energy …
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Jane Grimwood Named HudsonAlpha Genomics Chair
Congratulations to Jane Grimwood, who has been appointed the Loretta Purdy Spencer Chair in Genomics at the HudsonAlpha Institute for Biotechnology! … release of the high quality reference genome sequence of green millet ( Setaria viridis ). The team of researchers at …
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CreA-mediated repression of gene expression occurs at low monosaccharide levels during fungal plant biomass conversion in a time and substrate dependent manner
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Co‑cultivation of the anaerobic fungus Caecomyces churrovis with Methanobacterium bryantii enhances transcription of carbohydrate binding modules, dockerins, and pyruvate formate lyases on specific substrates
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CalTeach
CalTeach is a program for undergraduate majors interested in developing a deep understanding of STEM teaching & learning. Their …
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MycoCosm Tutorial
Learn more about MycoCosm, a data portal with over 2,000 fungal genomes and multi-omics datasets, equipped with interactive web-based tools for comparative genomics and community annotation. Presented by Igor …
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Marchantia Pangenome Highlights Adaptive Nature of Plant Lineages
They hypothesized that certain gene families — including fungal genes horizontally transferred — contributed to the … plant lineages makes it ideal for comparative genomics studies, offering insight into genes critical for … Marchantia  and in flowering plant lineages.   With the information about  Marchantia -specific innovations and …
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