Results

A novel regulator of the fungal phosphate starvation response revealed by transcriptional profiling and DNA affinity purification sequencing.
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Development of an integrated transcript sequence database and a gene expression atlas for gene discovery and analysis in switchgrass (Panicum virgatum L.)
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Coral mucus rapidly induces chemokinesis and genome-wide transcriptional shifts toward early pathogenesis in a bacterial coral pathogen
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Codon bias, nucleotide selection, and genome size predict in situ bacterial growth rate and transcription in rewetted soil
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JGI on the 2020 Highly Cited Researchers List
… Congratulations to the 2020 Highly Cited Researchers at the JGI! They are among those recognized by … genome sequence and genomic toolkit for the perennial grass  Miscanthus sinensis in  Nature Communications.  The … The U.S. Department of Energy Joint Genome Institute, a DOE Office of …
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What Happens Underground Influences Global Nutrient Cycles
… DOE user facilities EMSL and JGI announce FY 2020 collaborative FICUS projects. … colleagues have generated a high-quality, phenotyped mutant library in Chlamy, as the alga is colloquially known by … The U.S. Department of Energy Joint Genome Institute, a DOE Office of …
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Gene and transcript abundances of bacterial type III secretion systems from the rumen microbiome are correlated with methane yield in sheep
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Transcriptional response of the white-rot fungus Dichomitus squalens to polysaccharides reveals a co-expression network of plant biomass conversion related genes
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John Vogel
… Dr. Vogel joined JGI in 2014 to establish a plant functional genomics program. Prior to this, he … of Brachypodium distachyon as an experimental model for the grasses. In addition to this fundamental work, he … Brachypodium distachyon is a small annual grass that is well …
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Genome sequencing of the Trichoderma reesei QM9136 mutant identifies a truncation of the transcriptional regulator XYR1 as the cause for its cellulase-negative phenotype
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Mike Sneddon
… Dr. Sneddon is the Advanced Analysis Group Lead in the Data Science and Informatics … Liu, O., Akiva, E., Eyles, T. H., Galm, U., Ganesh, S., Hendrix, S. L. … Z., Shock, J., Sneddon, M., and Yang, X. Metagenomic library and natural product discovery platform. … PhD, Computational Biology & Bioinformatics, Yale University MS, …
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JGI@25: Expanding Metagenomics to Capture Viral Diversity
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable … That study multiplied the number of known viral genes by a factor of 16. The same year, the JGI expanded its existing …
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