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Streamlining Regulon Identification in Bacteria
… RIViT-seq technology could speed up associating transcription factors with their target genes. The Science Regulons are a group of genes that can be turned on … regulation is critical to ensuring genes vital for growth and survival across various environments are …
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Data Discovery Tool Helps Identify Microbial Roles within Metagenomes
… Protein annotations provide insights into environmental tendencies The Science The  Metagenome Stability Diagram — a tool within … Integrated Microbial Genomes and Microbiomes (IMG/M) platform — has been developed to help inform scientists and … The work conducted by the US Department of Energy Joint Genome Institute ( …
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Marchantia Pangenome Highlights Adaptive Nature of Plant Lineages
… Understanding the shared genetic toolkit of ancestral and present-day plants The Science In a recent  Nature Genetics paper , researchers … to spread across most of the plant’s ecosystems. The Impact For decades, the liverwort  M. polymorpha has been used as a …
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Mapping Heat Resistance in Yeasts
… A new approach for improving functional annotation in fungal genomes. The Science In a proof-of-concept study, researchers … The work conducted by the US Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science …
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A Model System for Perennial Grasses
… Panicum hallii genomes offer insights to drought tolerance. The Science Researchers have developed a genomic model to study … U.S. Department of Energy (DOE) supports research programs for developing methods for converting plant biomass into … The work conducted by the US Department of Energy Joint Genome Institute, a DOE Office of …
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A Sorghum Pangenome Opens More Doors to Discovery
… Leveraging decades of technological development, dozens of … and thousands of resequenced sorghum varieties, a resource for breeders and researchers to harness the traits that let … Shakoor, a research scientist at Donald Danforth Plant Science Center.  This work is the result of an international …
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Effects of Polar Light Cycle on Microbial Food Web
… Populations of Antarctic lake microbial communities change with the seasons. The Science Light-harvesting bacteria (phototrophs) in … occupy more space on Earth than any other ecosystem. Therefore, understanding the microbial activity that dominates … This work was supported by the Australian Research Council …
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A One-Stop Shop for Analyzing Algal Genomes
… The PhycoCosm data portal allows anyone to freely investigate the genes of more than 100 algae. The Science Interested in the genomes of algae? You now have one … Understanding the genetic underpinnings responsible for these traits takes us closer to harnessing algae for …
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Model Fern Reveals Insight into DNA Thievery in Ferns
… Open Green Genomes hits milestone with C. richardii The Science Fern genomes are huge, and incredibly complex — … metabolites and associated genes are great resources for bioremediation, new agricultural applications or … The work conducted by the US Department of Energy Joint Genome Institute is supported by the …
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From Intern to Published Scientist: The Journey of a JGI-UC Merced Intern
… For many scientists, the culmination of their work into a written report that is published … and it feels so rewarding,” Wint said. For Axel Visel, JGI Science Deputy and a co-founder of the internship program, …
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An Automated Tool for Assessing Virus Data Quality
… CheckV can help researchers assess virus sequence fragments and data quality. The Science Through advances in sequencing technologies and … virus sequences vary widely. In a previous effort, an international consortium recommended specific … The work conducted by the U.S. Department of Energy Joint Genome Institute is supported by the …
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Innovative Technology Improves Our Understanding of Bacterial Cell Signaling
… developed chemiluminescent biosensors shed light on how bacteria function and colonize diverse environments. The Science Cyclic di-GMP (Guanine Monophosphate) is found in … in regulating microbial cellulose production and biofilm formation, which affects a number of environments, including …
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