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… has partnered with researchers around the world to map out genomes of rumen microbes. In 2018, through a JGI Community … they called the Hungate1000, a catalog of 410 rumen microbe genomes. The project relied upon resources from laboratories … and curated culture and genome sequence resource of rumen microorganisms . Thanks to the breadth of this study, …

… Panicum hallii genomes offer insights to drought tolerance. The Science … hallii (Hall’s panicgrass), by generating two complete genomes from varieties that diverged over a million years … Science Program , JGI sequenced and assembled near-complete genomes of P. hallii var. hallii (99.2% complete) and P. …

… the concept, “the more the merrier,” with respect to their genomes. In their base state, they are diploids with two … flowering plants; at least once during their evolution, the genomes of flowering plants multiply. Over time, plants lose many genes after such events, returning their genomes to a diploid state while retaining multiple copies …

… Program , sequences of several hundred green millet plant genomes were generated, though the final analyses focused on … Schmutz and his team assembled and annotated the genomes at HudsonAlpha. Sujan Mamidi and Adam Healey, two of …

… — a then-novel approach which allows scientists to study microorganisms that can’t be cultured by analyzing and then … coherent pieces called contigs — into genes and even into genomes — from these environmental samples,” said Matthias …

… genomics pipeline that provides JGI users access to the genomes of uncultured microbes.  His group also handles the …

… access to large-scale datasets and analysis tools for genomes, metagenomes, and metabolomics through its data portals. …

… genomics. Fungi can be better understood through reference genomes, but unfortunately there are not many available to … study. This is because most fungal clades have no reference genomes. It’s a key problem to solve because fungi are very … and analysis at the JGI to help produce novel fungal genomes. They manually curate data to connect to the newly …

… Sainsbury Institute, by annotating not just one but three genomes for P. pachyrhizi , which are available on MycoCosm … Institute, who works extensively on ASR. “Having the genomes of a crop like soybean ensures that what we bring to … 3 P. pachyrhizi genomes on MycoCosm …

… possible by mining the datasets in the Integrated Microbial Genomes and Microbiomes (IMG/M) suite of tools managed by … Institute. The Impact The ability to accurately edit genomes (that is, repair gene mutations, and either delete … waiting to be unearthed in sequencing and analyzing uncultivated microbes. Summary The CRISPR-Cas system is an …

… genes of more than 100 algae. The Science Interested in the genomes of algae? You now have one place where you can … and enthusiasts to look deep into more than 100 algal genomes, compare them, and visualize supporting experimental … In part because of this evolutionary diversity, algal genomes can be incredibly complex and difficult to sequence …

… and led annotation and analysis of diverse eukaryotic genomes, from protists to plants. In 2009, he launched the … Fungal Genomics program which resulted in over 2500 fungal genomes in the JGI MycoCosm portal. In 2018, he launched … et al (2014) MycoCosm portal: gearing up for 1000 fungal genomes.  Nucleic Acids Res. 42(1):D699-704. Read B et al. …