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Natural Prodcast Episode 20: Brian Bachmann
… a postdoc and went to industry to see what they had, what data they had. DAN UDWARY: And they had a lot of data for the time, right? BRIAN BACHMANN: For the time. … an undergraduate and not succeeding and still using all the tools from mechanistic enzymology to natural product …
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Natural Prodcast Episode 23: Aaron Puri
… restricted niche. And they do need broad host-range genetic tools so it’s more complicated than working with something … thing I’ve learned is that when JGI gives you a ton of data you better have someone really smart to be able to … And so now that’s what I’m joking about having a lot of data. It’s a lot of metabolomics data sets. So what have we …
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Non-contiguous finished genome sequence and contextual data of the filamentous soil bacterium Ktedonobacter racemifer type strain (SOSP1-21T)
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An Integrated Dataset to Understand Ecosystem Interaction
… Research yields a comprehensive tree and soil dataset for understanding the dynamic relationship between … how ecosystems work and how healthy they are, a recent data set  outlined in  Scientific Data connects molecular features to large ecosystem-level … The work conducted by the National Microbiome Data Collaborative ( https://ror.org/05cwx3318 ) is …
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Supporting Global Research into Actinomycetes
… other related organisms, requires using more specialized tools, skills and protocols,” explained Hiroshi Otani, an … user-available API’s offer a space to not just store data, but for the community to discuss those data and make publicly-visible comments. Its purpose is to …
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16S rRNA Gene Amplicon Sequencing Data from Flooded Rice Paddy Mesocosms Treated with Different Silicon-Rich Soil Amendments
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Transcriptomic Data Sets for Zymomonas mobilis 2032 during Fermentation of Ammonia Fiber Expansion (AFEX)-Pretreated Corn Stover and Switchgrass Hydrolysates
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DOE Metrics
… capabilities to analyze complex genomic or metagenomic datasets. [Download PDF] Q3 – Report on new computational approaches for the annotation of genomic data. [Download PDF] Q4 – Report on a new computational … computationally enabled approach to analyze complex genomic datasets. [Download PDF]   FY 2014 Overall Sequencing …
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GenomeOcean Leverages AI to Decode Nature’s Secret Language
… Trained on environmental data, a new JGI tool more accurately facilitates microbial … of microbial life. By leveraging massive user-generated datasets at the JGI and other publicly available data, … — and primed for integration with artificial intelligence tools.  LLMs aren’t just for understanding the human …
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Applying Viral Genomics Expertise to Understanding the Human Virome
… JGI researchers lend expertise to develop tools and data hub for NIH program. While the microbes in, … viral genomics resources such as analytical tools and data repositories to two projects funded through the …
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New Vision, New Mission, New Plan: The JGI’s Next Five Years
… a vast range of organisms and ecosystems. These kinds of data could open opportunities along multiple avenues, … community with advanced genomic capabilities, large scale data, and professional expertise while responsibly managing … expect to offer our user community an exciting range of new tools and capabilities to support their scientific …
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Natural Prodcast Episode 14: Nigel Mouncey
… using these together along with all of our computational tools to really build out much more of an integrative … try to tackle these grand challenges. And then getting the tools that we develop into the hands of the broader … heard me speak recently have heard me talk about the new data portal that we’re building. And I’ve been eager to …
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