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Mapping the Earth’s Hidden Fungal Kingdom
… Leveraging massive comparative genomics to decode millions of mystery genes and lay a … into an estimated 2–6 million species — dwarfing the diversity of plants. To put this evolutionary timescale in … researchers with a sampling puzzle of extraordinary complexity. Beyond the sheer number of undiscovered species …
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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… as reliable markers for classifying species and studying diversity in complex biological systems. By making the tools and data … search environmental data, they developed a two-stage metagenomic detection pipeline: First, they scanned over 26,000 …
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… for multiple applications. The planet’s microbial diversity is immense, yet much of it remains unknown. For … knowledge. In a study published November 11, 2022, in Cell Genomics , the team focused on Actinobacteria ( … and produce antibiotics. Still, the team estimates that genomic information is only available for a fraction of …
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Tanja Woyke Awarded van Niel International Prize for Studies in Bacterial Systematics
… recognized Woyke as a pioneer in uncovering the hidden diversity of “microbial dark matter”–that uncultured and … around the planet–through techniques including single-cell genomics and metagenomics. They cited her “landmark” 2013 Nature paper , …
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Tracing the Evolution of Shiitake Mushrooms
… New genomes highlight the diversity of white rot fungi in the genus Lentinula   The … besides Europe and Antarctica. A  new analysis takes a  genomic look at Lentinula samples from around the world. By … sequencing were enabled by the Community Science Program (CSP) at the U.S. Department of Energy (DOE) Joint Genome …
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DAS Tool for Genome Reconstruction from Metagenomes
… individual genomes, particularly from incredibly complex soil microbial communities, is crucial to … changes. Summary Researchers have been utilizing metagenomics as a way to study a collection of hard-to-culture … complexity. The environmental datasets included metagenomic data from Crystal Geyser in Utah (work also done by …
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JGI Earth Month: Wetlands Work in #TenHundredWords
… and DNA are close to our JGI hearts, we’re highlighting genomic science research that feels especially relevant to … it yourself  here .) She translated her abstract from a 2019 conference. Both versions appear side-by-side below: … Kaze was part of the  2018 cohort of the JGI-UC Merced Genomics Internship Program, and is part of  Mark Sistrom’s …
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Engagement Webinar: Harnessing JGI’s Metabolomics Capabilities
… available through the  Community Science Program (CSP) . This includes mass spectrometry-based measurements of … analyses? A:  For the JGI  New Investigator and  Functional Genomics proposal calls, projects can request up to 50 polar … Metabolite Annotation and Gene Integration . ACS Chem Biol. 2019 Apr 19;14(4):704-714. doi: 10.1021/acschembio.8b01107. …
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Recombination and insertion events involving the botulinum neurotoxin complex genes in Clostridium botulinum types A, B, E and F and Clostridium butyricumtype E strains
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Genome-Wide Association Studies across Environmental and Genetic Contexts Reveal Complex Genetic Architecture of Symbiotic Extended Phenotypes
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Conserved genomic collinearity as a source of broadly applicable, fast evolving, markers to resolve species complexes: A case study using the lichen-forming genus Peltigera section Polydactylon
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Webinar: MycoCosm Tutorial
… genomes and those external genomes that enable JGI CSP projects – please first contact us … Q: Has there been any interest in using JBrowse / JB2  for genomic views ( e.g.,: … if there are better alternative models. 32.  Q: For Annual CSP – How many letters of support from the community are …
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