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Transcriptomics reveal a mechanism of niche defense: two beneficial root endophytes deploy an antimicrobial GH18‐CBM5 chitinase to protect their hosts
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Filling in the Plant Tree of Life
… plants and how they adapt to their ever-changing environments better? We could unlock new innovations to drive … food, medicine, and bioenergy crops. But most available genomes are from narrow swaths of the plant tree of life. One project aims to change that. …
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Supercomputing, MetaHipMer and the Mega Dataset of Lake Mendota
… over the last  25-plus years since the JGI’s inception, making it possible for researchers to get a close look … For example, with support from the  Exascale Computing Project , the JGI — along with the National Energy Research … ecosystem works. When she set out to analyze 500 metagenomes from this sample set through the Community Science …
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JGI Workshops at PAG
… breadth of algal diversity, the numbers of sequenced algal genomes, and the quality of those genomes, is rising. The purpose of this Workshop is to illustrate the expansion of this field and bring it to the attention of the wider … of plant systems. We will describe how to apply for a project with the JGI Community Science Program and how you …
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Exploring the loblolly pine (Pinus taeda L.) genome by BAC sequencing and Cot analysis
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Enlarging Windows into Understanding Gene Functions
… JGI innovates protocol revealing how genetic variations in sequences affect traits. In a text file, the rows of … it can also serve as a stepping stone to studying many genomes simultaneously through multiDAP, which allows … Program (CSP) focuses on a fungal comparative ENCODE project known as FUNCODE. “We noticed a few years ago that …
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From Berkeley to Binghamton: Tracking Strawberry Evolution
… In the summer of 2015, Adam Session was a postdoc working at the DOE Joint Genome Institute … developed a method to correctly identify polyploid subgenomes without needing to know the genomes of their … specific procedure.” The rapport they built during this project and others (including the dissertation that preceded …
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Doubling Down on Known Protein Families
… Using a novel computational approach, researchers confirm microbial … through the publicly available  Integrated Microbial Genomes & Microbiomes (IMG/M) database, they successfully … of Science User Facility  located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in …
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The endosymbiotic box of protective tricks
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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
… In honor of the JGI's 25th anniversary in 2022, we have … remains of trees can be seen. These plagued patches have become kindling for the inevitable next firestorm. The … engagement activities under the umbrella of the SOD Blitz Project. In hopes of controlling the spread of the disease, …
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Comparative genomics analysis of drought response between obligate CAM and C3 photosynthesis plants
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Emiley Eloe-Fadrosh
… ecology and metagenomics. Her current research focuses on leveraging thousands of metagenomic datasets from host-associated and environmental samples to identify and characterize genomic information from uncultivated microbes and viruses. Prior to joining … ( magna cum laude ) PhD, Marine Biology, Scripps Institution of Oceanography …
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