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Community Science Program
Areas . Through this program, the DOE aims to advance genome science-based scientific research from a broad range … The  New Investigator and Functional Genomics calls do not require an LOI.  Projects will be chosen based on … of a project, the JGI makes the assemblies, gene annotations, and analyses available to the community at large. …
Learn more
The Surprising Structure of a Shrub Willow Sex Chromosome
… hermaphrodites, expressing both male and female gametes in one individual. But some, including shrub willow  Salix … Laboratory and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … songbird W chromosomes — suggest that they are advantageous enough to have evolved multiple times independently. The …
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In Hot Spring Microbial Mat, Viruses Ride “Piggyback”
… do they tend to specialize, infecting just a single host? Another wrinkle in the mystery is that viruses can affect … lysogeny, they can insinuate themselves inside the host’s genome, living quietly and replicating with their host indefinitely. Now, in studying a microbial mat from Cone Pool in Mono County, California, scientists have used …
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Fields of Breeders’ Dreams: A Team Effort Toward Targeted Crop Improvements
… aren’t interested in waiting decades to develop new crops. One example is an ongoing collaborative effort to improve … and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … Laboratory (Berkeley Lab), has produced a high-quality reference sequence of the complex switchgrass  genome using …
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A Natural Mechanism Can Turbocharge Viral Evolution
… ago, a team discovered a group of viruses that had in their genomes a surprising tool: a “diversity generating … available datasets. They’ve discovered that DGRs are not only widespread, but also surprisingly active. In … only for viruses and other microbes , but for scientists. One emerging industry application of DGRs is to use them to …
Learn more
JGI@25 RECAP: 2022 Annual Meeting features historical perspectives on JGI’s 25 years
… from its beginnings in the sequencing for the Human Genome Project out to the future of the institution. Their … great success. “For the most difficult challenges, no one agency has enough to go for it alone,” he said. A Larger … impact, Anderson explained. As an illustration of this, he noted the new 25th anniversary mural that local Bay Area …
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A Step Toward Controlling Soybean Rust
… yields by as much as 90 percent. As part of the DOE Joint Genome Institute’s  2016 Community Science Program portfolio … for Agricultural Research (INRA)  proposed sequencing a reference genome for  P. pachyrhizi to develop better strategies to …
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DOE JGI Interns Share Their Summer Experiences
… worked with Zhong Wang while Karen Tolentino worked with Brachypodium researcher John Vogel. Other students hosted … summer were: Rida Ali, who worked with T.B.K. Reddy on the Genomes OnLine Database; Sarah Fruchart , who worked with …
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JGI@25: From Life at the Extremes to Editing Genomes
… 25th anniversary in 2022, we have revisited a number of notable achievements that showcase our collaborations and … The collaboration has resulted in several papers, including one in 2018 on the discovery of miniature CRISPR-associated … is a pioneer in metagenomic studies, recovering microbial genomes from biofilm samples at the Richmond Mine in Iron …
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Applying Viral Genomics Expertise to Understanding the Human Virome
… the Milky Way, viruses outnumber the microbes by at least another order of magnitude. For years, scientists at the DOE Joint Genome Institute, a DOE Office of Science user facility … , head of the JGI’s  Microbiome Data Science , leads one project with JGI colleagues Antonio Camargo and Simon …
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Celebrating a Decade of Science through the JGI-UC Merced Genomics Internship Program
… of the flagship internship program between the DOE Joint Genome Institute (JGI) and University of California (UC), … campuses with this being our largest and most successful one. It’s proven to be a really good model for us that we … program cofounder and Applied Math professor at UC Merced, noted that the part that was the most rewarding of all the …
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JGI@25: Mapping Switchgrass Traits with Common Gardens
… 25th anniversary in 2022, we have revisited a number of notable achievements that showcase our collaborations and … crop. In 2018, the JGI had sequenced and assembled the genomes of two varieties of a close relative and model … the University of Texas at Austin produced a high-quality reference sequence of the complex switchgrass genome. The …
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