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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
… A group led by JGI scientists have made strides in improving and applying a method that allows researchers … lands the cover of ACS Synthetic Biology. (Wayne Keefe/Berkeley Lab) For example, the JGI first used CRAGE to engineer …
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The Power of One, Amplified
… A preview of how large-scale single cell genomics complements metagenomics studies. The … a DOE Office of Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab), employed single-cell sequencing … The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, …
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Styling for Safety: PPE, It’s the JGI Way
… PPE or Personal Protective Equipment is worn to minimize exposure to hazards that can cause workplace … mechanical, or other workplace hazards. At the IGB laboratories, the minimal PPE requirements when actively working include safety glasses, lab coats, gloves, long pants that cover ankles, and shoes …
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DAS Tool for Genome Reconstruction from Metagenomes
… Developing and validating an integrated approach to genome recovery … cycling to plant health and growth. Developing a scalable computational approach that provides researchers with … collaborator Jill Banfield of the University of California, Berkeley and involving JGI researchers, reported on the …
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Gene Expression: From On-Off Switch to Dial
… Fine-tuning metabolic gene expression helps identify variants … to other systems, expanding the technologies available for other JGI users outside the realm of bioenergy … a DOE Office of Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab). Researchers …
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JGIota: Looking Back at How Cow Rumen Samples Landed on a Syllabus
… Back in 2011, JGI-supported researchers published a paper in the journal Science . It detailed how they’d used … that study is now used across California State University campuses for biotechnology education as part of a … User Executive Committee, on how that study went from the lab to the classroom. …
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Boosting Small Molecule Production in Super “Soup”
… Do metabolic pathways from engineered yeasts still work in cell-free environments? … a DOE Office of Science User Facility located at Lawrence Berkeley National Laboratory, indicates metabolic pathways could be more … a DOE Office of Science User Facility  located at Lawrence Berkeley National Laboratory, is committed to advancing …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… Team develops a computational pipeline to sift and characterize RNA virus sequences.  A zoo … a DOE Office of Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab) describe a computational pipeline … a DOE Office of Science User Facility  located at Lawrence Berkeley National Laboratory, is committed to advancing …
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An Enzyme Family that Helped Shape Nitrogen Metabolism on Our Planet
… Researchers looked across many organisms to see that aminotransferase enzymes have evolved mix-and-match … Genomics and Systems Biology Division of Lawrence Berkeley National Laboratory (Berkeley Lab). He completed this work with …
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Tracing the Evolution of Shiitake Mushrooms
… New genomes highlight the diversity of white rot fungi in the genus Lentinula   The Science Shiitake mushrooms get … raphanica, which has been able to adapt to habitats from Alabama to Brazil, suggesting that the same decay-related … a DOE Office of Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab). …
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An Integrated Dataset to Understand Ecosystem Interaction
… yields a comprehensive tree and soil dataset for understanding the dynamic relationship between poplar trees and their … feedstock. Public accessibility to the data made available through this multidisciplinary approach allows … a DOE Office of Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab). All of this …
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Game On: High School Students Drive Everglades Metagenomics Study
… In late June, Kathleen Lail, a member of JGI’s Sample … summer of 2018, Jonathan Benskin was preparing to teach a second year A-Level Advanced International Certificate of … along with water content. The class had to work collaboratively and creatively to come up with a sense of what …
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