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Ray Turner Completes Last Tour of Lab Duty at JGI
… JGI’s Operations Deputy has come to a close as this previously retired Naval Commander retires from Berkeley Lab. For … recruitment of a new JGI Director, and towards the strategic co-localization of JGI and KBase at the … is still good. “I noticed right away,” said Ellen Ford about Ray’s personal impact on her, “that you started …
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Fungus Fuels Tree Growth
… a potential biofuel feedstock.     The Science The fungus  Mortierella elongata enjoys a dual lifestyle; it can … an endophyte, living between a plant’s root cells. The fungus is almost always found among and within poplar trees, and … were striking. Adding PM193 caused poplar cuttings to grow about 30 percent larger by dry weight than without PM193  . …
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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… discovered more than 6,000 mitochondrial sequences previously unrecognized within existing public databases and … that carry them were strikingly different in both size and organization: Mitochondrial genome size and structure varied … systems produce and manage energy. By advancing the JGI’s strategic effort to generate 10,000 high-quality, AI-ready …
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Tanja Woyke
… which she deciphered function and host-symbiont interplay using metagenomics. Taking on a Research Scientist position … Lead position in 2009 and assumed the Deputy Director of User Program position in 2021. In addition to her JGI … Merced's School of Natural Sciences since 2015. Prospective users with specific questions regarding their proposed …
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Chloroflexi CL500-11 Populations That Predominate Deep-Lake Hypolimnion Bacterioplankton Rely on Nitrogen-Rich Dissolved Organic Matter Metabolism and C1 Compound Oxidation
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Simon Roux Named 2025 ASM Microbiome Data Prize Awardee
… Congratulations to US Department of Energy (DOE) Joint Genome Institute (JGI) … Program, and coordinates the development of the virus and plasmid workflows for the National Microbiome Data … for data quality and sharing, and data workflows and management best practices that have advanced the microbial …
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JGI Welcomes New UEC Members
… The JGI User Executive Committee (UEC) represents the JGI user community and is responsible for providing input and … JGI offers, as well as proposal review procedures and the organization of the JGI Annual Meeting. Any investigator who …
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A Plant Root Atlas for Tracking Developmental Trajectories
… single root cells and combining the information with previously published datasets. The work was  recently published in … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … transcriptomic technologies, as described in the JGI Strategic Plan. The present paper provides a foundational …
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Complete Genome of the Cellulolytic Ruminal Bacterium Ruminococcus albus 7
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Building Sphagnum Genomic Resources
… resources to build up Sphagnum as a plant model system focused on carbon cycling studies, rather than for food or fuel … is estimated to be larger than any other single plant genus. Peatlands accumulate partially decomposed matter, and researchers estimate that they hold about 25 percent of the world’s soil carbon. In high …
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Mike Sneddon
… bioinformatics pipelines and a laboratory information management (LIMS) system. He previously led the NGS Software team and metagenomic data platform … discovery platform. WO2021163637A1 , PCT application PCT/US2021/018050 (published 2021). Arkin, AP, et al. KBase: The …
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… analysis leads to identification of biosynthetic gene clusters for novel secondary metabolites for multiple … synthesis of secondary metabolites, in line with the JGI’s strategic initiatives. These specialized compounds enable … information as well as of important descriptive metadata about each strain. “This has been a very fruitful …
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