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Prokaryotic viruses impact functional microorganisms in nutrient removal and carbon cycle in wastewater treatment plants
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JGI Scientists Pen Genome Watch Articles
JGI researchers made their debut writing for the Nature Reviews Microbiology column last year — and there’s more to … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … .  The latest article, published January 27, is about engineering plants and their microbiomes for more …
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Trent Northen
… leadership roles within large DOE-funded research programs using mass spectrometry for energy and environmental … Science Program Head at the JGI. Click to learn more about the program's areas of focus, major initiatives and … workshops, organizes conference sessions, and serves on review panels. At Berkeley Lab he serves on a number of …
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Marchantia Pangenome Highlights Adaptive Nature of Plant Lineages
Science In a recent  Nature Genetics paper , researchers focused on the full composition of genes, or pangenome, of the … Berkeley National Laboratory through the Community Science Program . The comparative framework provided by these high … Summary As the planet has changed, so have plants. Curious about their ability to adapt to changing environments, …
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Water aging and the quality of organic carbon sources drive niche partitioning of the active bathypelagic prokaryotic microbiome
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Training the Next Generation of Talent
New Graduate Internship Program Builds Bridges Between DOE JGI, UC Merced Days after … Joint Genome Institute (DOE JGI), a DOE Office of Science user facility, Keedrian Olmstead was back on campus at the … The third member of the internship program’s oversight committee is QSB assistant professor Suzanne Sindi . “There …
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Simon Roux
… to lead viral genomics research as part of the Metagenome Program. His responsibilities include the development of novel computational tools to identify virus sequences, the design of new experimental approaches to … 12, 3076. Roux et al., 2018. Minimum Information about an Uncultivated Virus Genome (MIUViG). Nature …
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2024 Progress Report
… in the IGB. Vision  Lead genomic innovation for a sustainable bioeconomy. Mission  As a U.S. Department of … attendees with a rich agenda across our scientific programs, as well as workshops that gave participants … of 2024, the DOE held a Triennial Science and Operations review of the JGI. This provided not only the chance to …
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Game On: High School Students Drive Everglades Metagenomics Study
Management Group, attended a conference in Florida to discuss a JGI pilot project involving soil sampling in the … the next generation of scientists. She shares her thoughts about the experience below. In the summer of 2018, Jonathan … this Everglades area. Their paper is currently under peer review. Although the class is over and the students are …
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Phylogenomic analysis of 589 metagenome-assembled genomes encompassing all major prokaryotic lineages from the gut of higher termites
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How Filamentous Fungi Sense Food
Tracing gene regulatory networks in the model fungus  Neurospora crassa . The Science A team led by … degrade the plant biomass. In order to learn more about these regulatory networks in the model fungus  N. … work was enabled in part through JGI’s Community Science Program through a proposal akin to the Encyclopedia of DNA …
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Better Genome Editing for Bioenergy
… of the genes in a lipid-prolific yeast. The Impact The team used this set of guide RNAs on  Yarrowia lipolytica to … furthers the U.S. Department of Energy’s goal of producing sustainable fuels from alternative sources. Moreover, the … is actually essential. Through the JGI’s  Community Science Program , the scientists thus set out to identify which …
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