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Silver age of GOLD introduces new features
… ago, the  Genomes OnLine Database has matured from six projects on a spreadsheet into a flagship  genomic metadata … projects carried out at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … from public repositories, as well as project data entered by external users. The Impact One of the significant …
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Does time matter? Intraspecific diversity of ribosomal RNA genes in lineages of the allopolyploid model grass Brachypodium hybridum with different evolutionary ages
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2025 Progress Report
… a U.S. Department of Energy Office of Science user facility supported by the Biological and Environmental Research program, the Joint Genome Institute provides advanced genomic …
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A More Intuitive Phytozome Interface
… v12 was first deployed (as the foundation for Phytozome v10) back in 2014.  Several components of that codebase are no longer supported, and there are now much more powerful and flexible … 6th? All URLs with a domain of  https://phytozome.jgi.doe.gov will be forwarded ( where possible ) to their …
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Computationally Classifying Fungal Lifestyles
… an algorithm that “taught” a computer how to classify 101 representative genomes of Dothideomycetes, the largest class of fungi, by lifestyles. The machine “learned” to identify data … led by researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User …
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Statement on the Use of Genomics Data
… The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is committed to advancing the … discovery and maximize the benefit to society. Inspired by the Human Genome Project (HGP), and building upon the … ability of the principal investigators of approved JGI user projects to publish the primary report of their data without …
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Understanding Wildfire Recovery, Starting in Soil
… at microbial genomes across a spectrum of burned soils. By connecting microbial genes with functions useful for … Sciences Laboratory and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI). EMSL and the JGI are DOE … This work was supported through a USDA NIFA award (2021-67019-34608) to …
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JGI Advisory Committee
… The JGI Advisory Committee (JAC) is convened by the JGI Director to provide guidance on the Institute’s … JGI advisory and executive committees, such as the User Executive Committee, the DNA Synthesis Science User Advisory Committee, the Fungal and Algal Program User …
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JGI Interns at UC Merced Earn CAMP Merit Awards
… As part of the ongoing partnership between DOE JGI and UC Merced to promote diversity and inclusion in … at UC Merced. CAMP is a statewide initiative funded by the National Science Foundation (NSF) and supports … the 99 students who attended, representing 9 UC campuses, 10 special merit posters/presenters and 10 honorable …
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Accessibility/Section 508 Statement
… or concerns related to the accessibility of this website to DOE Section 508 Coordinator mailbox.   For more information about Section 508, please visit the DOE Section 508 website. …
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Complementary Microorganisms in Highly Corrosive Biofilms from an Offshore Oil Production Facility
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What Happens Underground Influences Global Nutrient Cycles
… EMSL and JGI announce FY 2020 collaborative FICUS projects. Through the Facilities Integrating Collaborations … mutant library in Chlamy, as the alga is colloquially known by researchers. A missing gene from this mutant library … Belowground Biogeochemistry Scientific Focus Area (SFA), supported by the Terrestrial Ecosystem Science (TES) program …
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