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Conserved unique peptide patterns (CUPP) online platform 2.0: implementation of +1000 JGI fungal genomes.
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Codon bias, nucleotide selection, and genome size predict in situ bacterial growth rate and transcription in rewetted soil
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Expanded genome and proteome reallocation in a novel, robust Bacillus coagulans strain capable of utilizing pentose and hexose sugars
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A Chromosome-Scale Genome Assembly of the Flax Rust Fungus Reveals the Two Unusually Large Effector Proteins, AvrM3 and AvrN.
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Steven Wilson
… Since 2018, Mr. Wilson has served as the Systems Engineering Group lead.   The … Mr. Wilson joined the JGI in 2002.  A fter supporting the sequencing core at Exelixis Biopharmaceuticals as an intern, … Engineer where he added structure and process to the group by developing SOPs for instrument maintenance and operation. …
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Busting the Unbreakable Lignin
… evidence shows anaerobic fungi can degrade the hardiest of plant components   The Science There are three main … to any type of lignin breakdown — and lignin breakdown by anaerobic fungi therefore thought to be impossible.  And … with researchers at the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility at …
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Supporting Global Research into Actinomycetes
… ActinoBase offers a public portal of insight into special groups of actinobacteria … a scientist at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … its Secondary Metabolites research group . That group, led by JGI Director Nigel Mouncey, has launched its  Secondary …
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Using DNA affinity purification sequencing (DAP-seq) to identify in vitro binding sites of potential Novosphingobium aromaticivorans DSM12444 transcription factors
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A Plant Root Atlas for Tracking Developmental Trajectories
… A collaborative team led by Geoffrey Schiebinger at the … scientist at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … Joint Genome Institute, a DOE Office of Science User Facility  located at Lawrence Berkeley National Laboratory, is …
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Simon Roux
… Dr. Roux joined the JGI in 2017 to lead viral genomics research as part of the Metagenome Program. His responsibilities include the development … B.S. in Microbiology, Université Blaise Pascal, France M.S. in Data Analysis and Modeling for Life Sciences, Université Blaise …
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Nitrogen fixation in Pampinifervens, a new species-rich genus of Aquificaceae that inhabits a wide pH range in terrestrial hot springs
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Comparative genomics, proteomics and transcriptomics give new insight into the exoproteome of the basidiomycete Hebeloma cylindrosporum and its involvement in ectomycorrhizal symbiosis
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