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Supercomputing, MetaHipMer and the Mega Dataset of Lake Mendota
… to enable large-scale analysis. The story of a massive metagenome assembly for a time-series experiment from the … Podcasts ,  Spotify or wherever you get your podcasts) Microbial ecologist and JGI user Trina McMahon has been … ecosystem works. When she set out to analyze 500 metagenomes from this sample set through the Community Science …
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Complete genome sequence of the thermophilic, hydrogen-oxidizing Bacillus tusciae type strain (T2T) and reclassification in the new genus, Kyrpidia gen. nov. as Kyrpidia tusciae comb. nov. and emendation of the family Alicyclobacillaceae da Costa and
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Complete genome sequence of Planctomyces brasiliensis type strain (DSM 5305T), phylogenomic analysis and reclassification of Planctomycetes including the descriptions of Gimesia gen. nov., Planctopirus gen. nov. and Rubinisphaera gen. nov. and emended
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JGI@25: Building a Better Bean
… common bean’s nutritional value, providing anywhere from 10-30% of daily protein requirements. It is also an … Phaseolus as a test model quite frequently for R&D in plant genomics, because it is an inbred dicot,” Schmutz explained, …
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Genome sequences of key bacterial symbionts of entomopathogenic nematodes: Xenorhabdus cabanillasii DSM17905, Xenorhabdus ehlersii DSM16337, Xenorhabdus japonica DSM16522, Xenorhabdus koppenhoeferii DSM18168, and Xenorhabdus mauleonii DSM17908
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JGI-Enabled Research Demonstrates the Existence of New Methane-Makers
… to  Euryarchaeota .  Finding Methane-Making Microbes with Metagenomics  By leveraging metagenomics to sample the entirety of a microbial community out in its natural environment, … Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy …
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2021 JGI Proposal Call Brings New Investigators into Community Science Program
… University of Minnesota to establish the Natural Products Genomics Resource Center. To help enable the discovery of … The work builds upon a pilot project to sequence antimicrobial-producing strains. Established by Handelsman, Tiny … with 600 instructors worldwide who work with more than 10,000 undergraduate students each year. Brian Looney of …
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The More the Merrier: Making the Case for Plant Pan-genomes
… said John Vogel, head of the Plant Functional Genomics program at the JGI and a senior author on the … Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy …
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Boosting Small Molecule Production in Super “Soup”
… than were noted inside the cell. “One of the huge advantages of the cell-free system is that the cells are no … Rapid Prototyping of Genes and Pathways” at the JGI Annual Genomics of Energy & Environment Meeting on September 1, … Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy …
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Jeremy Schmutz
… genome architecture of sugarcane. Nature 628, 804–810. Sreedasyam, A., Plott, C., MdS Hossain, J. T., Lovell, … agronomically valuable loci. Nature Biotechnology 38:1203-1210. Chen, ZJ et al. 2020. Genomic diversifications of five … of the model grass Brachypodium distachyon. Nature 2010;463:763-8. Schmutz, J et al. 2010. Genome sequence of the …
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The Surprising Structure of a Shrub Willow Sex Chromosome
… some songbird W chromosomes — suggest that they are advantageous enough to have evolved multiple times independently. … Foundation of China (31590821, 31561123001, 31500502, 41871044), National Key Research and Development Program of China (2017YFC0505203, 2016YFD0600101), and the National Key Project for Basic Research …
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Climate Change Threatens Base of Polar Oceans’ Bountiful Food Webs
… point to this fundamental observation of cold and warm microbial networks, and just how clear and stark the … Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy …
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