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JGI@25: Building a Better Bean
… common bean’s nutritional value, providing anywhere from 10-30% of daily protein requirements. It is also an essential … for large producers. The team sequenced and assembled a 473-million basepair genome of the common bean, identifying … Phaseolus as a test model quite frequently for R&D in plant genomics, because it is an inbred dicot,” Schmutz explained, …
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Characterizing Communities: JGI Announces Latest CSP Portfolio
… transformations.” The JGI’s large-scale call included algal genomics as a focus area, and one of the accepted proposals … Tara Oceans Expeditions that took place between 2009 and 2013, the  Chaetoceros genus has been identified as the most … Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy …
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Genome sequences of key bacterial symbionts of entomopathogenic nematodes: Xenorhabdus cabanillasii DSM17905, Xenorhabdus ehlersii DSM16337, Xenorhabdus japonica DSM16522, Xenorhabdus koppenhoeferii DSM18168, and Xenorhabdus mauleonii DSM17908
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JGI-Enabled Research Demonstrates the Existence of New Methane-Makers
… to  Euryarchaeota .  Finding Methane-Making Microbes with Metagenomics  By leveraging metagenomics to sample the entirety of a microbial community out in its natural environment, … Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy …
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2021 JGI Proposal Call Brings New Investigators into Community Science Program
… resulting from 95 letters of intent. For the first time, 63 percent of the accepted proposals come from investigators … University of Minnesota to establish the Natural Products Genomics Resource Center. To help enable the discovery of … The work builds upon a pilot project to sequence antimicrobial-producing strains. Established by Handelsman, Tiny …
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The More the Merrier: Making the Case for Plant Pan-genomes
… said John Vogel, head of the Plant Functional Genomics program at the JGI and a senior author on the … are all available on the JGI’s plant portal  Phytozome v13 . Researchers from the following institutions were also … Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy …
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Webinar: SIP technologies at EMSL and JGI
… 1. Q(uestion): How much DNA is required for the JGI SIP metagenomics pipeline? A(nswer):  The more the better. We want … don’t have a great way to resolve root respiration from microbial processes, but we’re not mixing the tracer with … Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy …
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The Surprising Structure of a Shrub Willow Sex Chromosome
… some songbird W chromosomes — suggest that they are advantageous enough to have evolved multiple times independently. … by the National Natural Science Foundation of China (31590821, 31561123001, 31500502, 41871044), National Key Research and …
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Boosting Small Molecule Production in Super “Soup”
… the sugar glucose to the products including ethanol and 2,3-butanediol (BDO). To do so, the yeasts received … than were noted inside the cell. “One of the huge advantages of the cell-free system is that the cells are no … Rapid Prototyping of Genes and Pathways” at the JGI Annual Genomics of Energy & Environment Meeting on September 1, …
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Jeremy Schmutz
… Following the completion of the Human Genome Project in 2003, he developed sequencing, assembly, and improvement … simple yeasts to large vertebrate genomes.  For the past 13 years, Mr. Schmutz has directed the JGI Plant Program, … Plott, C., MdS Hossain, J. T., Lovell, J. T.., et al. 2023. JGI plant gene atlas: an updateable transcriptome …
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Climate Change Threatens Base of Polar Oceans’ Bountiful Food Webs
… point to this fundamental observation of cold and warm microbial networks, and just how clear and stark the … Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy …
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An Enzyme Family that Helped Shape Nitrogen Metabolism on Our Planet
… Korea as well as a faculty affiliate in the Environmental Genomics and Systems Biology Division of Lawrence Berkeley … located at Berkeley Lab. In addition to providing metagenome mining for computational analysis of the AT enzyme … fungi and animal. This analysis led them to identify 2,938 putative AT  genes. Within the AT genes identified across …
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