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Neha Varghese
… Neha’s key role is to design, benchmark, and apply bioinformatics software to enable analysis and interpretation of genomic and metagenomic data …
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Busting the Unbreakable Lignin
… New evidence shows anaerobic fungi can degrade the hardiest of plant components … to tackle when it comes to breaking down a plant for energy: Cellulose, hemicellulose and lignin, … Center. O’Malley is also affiliated with JBEI. The JGI data portals and pipelines helped identify potential genes …
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The Case for Conservation
… How sex chromosomes “older than dinosaurs” could help improve crop yields.  The Science The fire moss Ceratodon purpureus is a short plant with a complex genome . Now, high-quality reference … advances in sequencing technologies applied to the effort. The Impact Found on all continents, including …
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Plotting a Model for Virus-Host Warfare Deep Below Ground
…   Visualizing a novel, candidate viral genome found in the deep subsurface … by combining a study of microbial communities (metagenomics) and a chemical labelling approach. The Impact … fresh organic carbon which can serve as a food source for other microbes into the environment. Summary In J. R. R. …
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Waiting to Respire
… Genomes from uncultivated bacteria offers clues to ancestral bacteria’s energy sources. More than two billion years ago, cyanobacteria acquired the ability … 2019 in Nature Communications , two research teams joined forces and data sets to describe bacterial genomes for …
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JGI Earth Month: Kjiersten Fagnan Reflects on Shelter-in-Place Effects
… we mark both the 50th celebration of Earth Day on April 22, and DNA Day on April 25.  On March 17, 2020, a shelter-in-place order for all residents took effect in six San Francisco Bay Area counties. The JGI, located at Lawrence … Lawrence Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean …
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Accelerating Metagenomics Discoveries with Deep Learning
… from Lawrence Berkeley National Laboratory (Berkeley Lab) and other institutions shared their works-in-progress with 86 participants in an online workshop to harness deep learning for metagenomic data.  Metagenomic data, or DNA sequencing … Lawrence Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean …
Learn more
Engagement Webinar: How to Successfully Apply for a CSP Proposal
… On September 1, JGI held a JGI Engagement: Pro Tips for Successful Community Science Program (CSP) Applications … Carefully read our proposal call description and ensure your idea is aligned Discuss your proposal idea … key points about JGI’s capabilities, technical feasibility, and relevance to the DOE’s mission.  Have someone proofread …
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Panel Discussion: Launching & Sustaining Startups in Synthetic Biology
… Synthetic Biology Who’s Invited? All Berkeley Lab Employees and Affiliates. When: August 29th, 3:00 pm – 5:30 pm 3:00 pm – 4:15 pm: Panel discussion, Q&A followed by: 4:15 pm – 5:30 pm: Hosted … from the panel discussion  here . Contact  Robin Johnston for followup questions.     …
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Tracking the Origins of Methane-Producing Microbes
… Mini-Metagenomics Approach Helps Identify Novel Archaeal Methane … cycle. All methanogenic archaea use one of three pathways for methanogenesis: hydrogen-dependent and CO2-reducing, or … Lawrence Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean …
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Green Algae Reveal One mRNA Encodes Many Proteins
… – in two species of green algae, Chlamydomonas reinhardtii and Chromochloris zofingiensis . “I was scrutinizing the genes of one of our species of algae and kept seeing what looked like mistakes by the gene … research team included scientists at the University of California (UC), Berkeley, UCLA, UC Davis, Brookhaven National …
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Engagement Webinar: Utilizing long-read sequencing for metagenomics and DNA modification detection
… long-read DNA sequences to aid with genome assembly and transcriptome analysis of microbial, fungal, and plant … Input & sequencing Q(uestion): How much DNA is needed for “regular” vs the ultra-low input library creation … Lawrence Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean …
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