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JGI@25: Mapping Switchgrass Traits with Common Gardens
… anniversary in 2022, we have revisited a number of notable achievements that showcase our collaborations and … feedstock crop. In 2018, the JGI had sequenced and assembled the genomes of two varieties of a close relative and … and environments. The long-term investments in both the genomics and gardens are helping these shrubby grasses …
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JGI@25: Following Fungi that Pry Apart Plant Polymers
… the last year, we’ve been revisiting a number of notable achievements that showcase our collaborations and … standards.  A year later, her team used proteomics, genomics and transcriptomics to discover another advantage … the capacity to form enzyme complexes that work like assembly lines for efficiency.  In 2021, her team saw that …
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JGI User Executive Committee Expands
… biodiversity, and how these changes affect the dynamics and functioning of ecosystems. She leads a recently approved CSP … to understand the genetic basis of fungal community assembly on dead wood decomposition. She’s also participated … genetics expertise and experience as a primarily fungal genomics user, he aims to help align JGI policies with …
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Waiting to Respire
… Genomes from uncultivated bacteria offers clues to ancestral bacteria’s … to gain and harness energy. As reported January 28, 2019 in Nature Communications , two research teams joined … Matheus Carnevali was working with a group of metagenome-assembled genomes (MAGs) dubbed Margulisbacteria, and had …
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Expanding Virophage Diversity
… are small viruses with double-stranded DNA genomes that co-infect eukaryotic cells along with giant viruses. … the number of known high quality virophage genome sequences 10-fold through computational approaches. By mining more than 14,000 publicly available metagenomic datasets in JGI’s  Integrated Microbial Genomes & …
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Honey Bee Gut Microbiota Divvy Up Dinner
… Scientists find bee gut microbes have a division of labor when it comes to metabolizing complex polysaccharides. Honey bees are invaluable … Department of Energy Joint Genome Institute, a DOE Office of Science User Facility  located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy …
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Panel Discussion: Launching & Sustaining Startups in Synthetic Biology
… The Berkeley Lab Biosciences Area Entrepreneurship Program presents… Eyes on the … When: August 29th, 3:00 pm – 5:30 pm 3:00 pm – 4:15 pm: Panel discussion, Q&A followed by: 4:15 pm – 5:30 pm: … Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy …
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A Step Toward Controlling Soybean Rust
… The United States  is the world’s leading soybean producer , and soybeans are used to produce biodiesel. The fungus  Phakopsora pachyrhizi causes Asian … 90 percent. As part of the DOE Joint Genome Institute’s  2016 Community Science Program portfolio , Sebastien Duplessis …
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Green Algae Reveal One mRNA Encodes Many Proteins
… Gene expression in eukaryotes was long held to be monocistronic – that is, a single gene makes messenger RNA, which encodes a single protein. Gene expression in eukaryotes … Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy …
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Webinar: Introducing the BioSANS capability
… The BioSANS instrument is at the Center for Structural Molecular Biology (CSMB) at Oak Ridge National Laboratory.   On March 2, 2021, the Environmental Molecular Sciences Laboratory hosted a … Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy …
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Engagement Webinar: Accessing NEON’s Environmental Sample Archives, Applying JGI & EMSL Omics Tools
… The  National Ecological Observatory Network (NEON) is a network of field … which archives and makes available for research over 100,000 samples and specimens of over 60 different types of … Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy …
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Engagement Webinar: Utilizing long-read sequencing for metagenomics and DNA modification detection
… This webinar focused on how the JGI employs single-molecule, long-read DNA sequences to aid with genome assembly and transcriptome analysis of microbial, fungal, and … for PacBio? A(nswer):  Regular PacBio typically requires ~ 1.5-10 ㎍. Low-input protocols are continuously improved, but …
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