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Extracting the Secrets of Secondary Metabolites
… for growth yet essential for survival, may now be easier to characterize following a proof-of-concept study in which … Repeats) is the leading tool for accurately editing genomes, its effectiveness has historically been limited due … CRAGE (Chassis-independent Recombinase-Assisted Genome Engineering) is a technique researchers can use to …
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JGI@25: Cow Rumen and the Early Days of Metagenomics
… that showcase our collaborations and capabilities to enable great science that will help solve energy and … coherent pieces called contigs — into genes and even into genomes — from these environmental samples,” said Matthias … of rumen-digested switchgrass, researchers isolated and sequenced DNA from rumen microbes involved in the digestion …
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Fishing for Novel Cellulose Degraders
… A “bait and hook” single-cell genomic approach to bioprospecting. The Science One of the most vital pieces … by Tanja Woyke at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … to sort cells into several small pools, followed by whole genome amplification and shotgun sequencing. The team first …
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Effects of Polar Light Cycle on Microbial Food Web
… with the seasons. The Science Light-harvesting bacteria (phototrophs) in Antarctica’s Ace Lake defy the norm when it comes to nutrient cycling in polar regions. While microbial … researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User …
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Notes on the Microbial Diversity of Puerto Nuevo’s Coastline
… Puerto Nuevo is a small town along the Baja California coastline in Mexico. While conducting early field studies related to her thesis on cone snails, UC Merced graduate student …
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Susannah Tringe Named 2020 DOE Lawrence Award Recipient
… Congratulations to Susannah Tringe , one of eight scientists and engineers … Tringe, a microbiologist, was recognized for “advances in sequence-based studies of microbial assemblies, revealing … emissions, and water recycling.” Tringe is the interim director of Berkeley Lab’s Environmental Genomics and Systems …
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Silver age of GOLD introduces new features
… The JGI’s Genomes OnLine Database celebrates 25 years as a vital … The Science Since its launch 25 years ago, the  Genomes OnLine Database has matured from six projects on a spreadsheet into a flagship  genomic metadata repository, making curated … U.S. Department of Energy Joint Genome Institute (https://ror.org/04xm1d337), a DOE Office …
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Benjamin Cole
… studying how plants interact with their environment. Prior to joining the Joint Genome Institute, his focus was primarily on how plants … temperature oscillations throughout the day. At the Joint Genome Institute, Dr. Cole’s research focus has been on …
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SPRUCE-ing Up Science
… is now applying his internship lessons on presentations to peatlands Travis Lawrence sits in his backyard in … one of the first students to participate in the DOE Joint Genome Institute (JGI)-UC Merced internship program, … colonize the roots of sphagnum work to transfer their thermotolerance abilities. This capacity to survive elevated …
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Kjiersten Fagnan
… computing consultant, after completing a petascale postdoctoral fellowship at NERSC and LBNL’s Computational Research … methods for reacting subsurface flows, and evolved into scalable methods for scientific data analysis. In 2014 … Engagement Lead with a focus on adapting JGI workloads to run on supercomputing hardware and worked closely with …
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JGI Announces 2026 New Investigator Portfolio
… Pictured from left: [Top row]: Emily G. Aguirre, Shauna M. Bennett, Laura Bogar, … Lisa Kappel, Gayan Kariyawasam; Ákos T. Kovács. Elina Laanto, Rose A. Marks, Daniel Mok, Elise Morrison, Jake Nash, … including metagenomics, metatranscriptomics and genome assembly to investigate microbial and plant …
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Engagement Webinar: Accessing NEON’s Environmental Sample Archives, Applying JGI & EMSL Omics Tools
… The  National Ecological Observatory Network (NEON) is a network of field research sites designed to collect long-term open access ecological data to better understand how U.S. ecosystems are changing.  … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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