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Simon Roux Named 2025 ASM Microbiome Data Prize Awardee
Congratulations to US Department of Energy (DOE) Joint Genome Institute (JGI) staff scientist Simon Roux , who was … Roux leads the Viral Genomics group within the JGI Metagenome Program, and coordinates the development of the virus …
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Work With the JGI! Tips for a Winning CSP Proposal
… later on in the spring. In this episode, hear proposal tips from Tanja Woyke, who runs user programs at the JGI, and …
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The Megadata of Lake Mendota - Part 2: Souped Up Computing
This series is the story of a giant metagenome assembly from Wisconsin’s Lake Mendota. In this …
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Simon Roux
… in 2017 to lead viral genomics research as part of the Metagenome Program. His responsibilities include the development … learning framework to maximize host prediction for metagenome-derived viruses of archaea and bacteria. PLoS Biology … Microbiology Resource Announcements … Education … Selected Publications … Awards and Honors …
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What Happens To a Rainforest When You Dial Up Drought?
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JGI@25: Following Fungi that Pry Apart Plant Polymers
… it’s possible that fungal communities — or enzymes from fungal communities — could pave the way for many … But there’s opportunities for borrowing and porting parts from nature — enzymes, transporters, pathways — into …
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Crops as Tough as World Cup Turf
Torrres have looked into traits that could transfer from grasses into other crops.  One grass they studied just …
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JGI Earth Month: Healthy Streams, Nutritious Microbes?
… changing planet. In this short audio production, we’ll hear from Ed Hall, an ecologist at Colorado State University in … more than 100 years. And in particular, there’s an inflow from the mining activities upstream and downstream of the … See you next time. … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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iPHoP: A Matchmaker for Phages and their Hosts
… led by scientists at the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility at … The work conducted by the U.S. Department of Energy Joint Genome Institute (https://ror.org/04xm1d337), a DOE Office …
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EcoFAB 2025: Advancing Mechanistic Microbial Science Using Fabricated Ecosystems
… laboratory ecosystems to help transition microbiome science from largely observational to reproducible mechanistic …
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Mindfully Moving JGI
JGI is in the process of shifting its operations from Walnut Creek to the heart of the Berkeley Lab campus. … that the process of moving 250 people and their equipment from 4 single-story buildings to a new 4-story building 20 … cleanup.lbl.gov .     … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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Honey Bee Gut Microbiota Divvy Up Dinner
… including collecting and analyzing the honey bee gut metagenome, which was done with the help of the US Department of Energy Joint Genome Institute.     … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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