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Genome sequence of the thermophilic fresh-water bacterium Spirochaeta caldaria type strain (H1T), reclassification of Spirochaeta caldaria, Spirochaeta stenostrepta and Spirochaeta zuelzerae in the genus Treponema as Treponema caldaria comb. nov.,
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Innovative Technology Improves Our Understanding of Bacterial Cell Signaling
… cyclic di-GMP in bacteria through work enabled by the JGI’s Community Science Program (CSP) . The Impact Cyclic di-GMP … at the University of California, Berkeley and the Joint Genome Institute, a DOE Office of Science User Facility, … 1) complementation of split luciferase (CSL) and, 2) bioluminescence resonance energy transfer (BRET)-based …
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Dealing with Drought: Uncovering Sorghum’s Secrets
… such as heat waves, droughts and floods. The planet’s resources are being stretched by a growing human population … Laboratory, and the U.S. Department of Energy Joint Genome Institute (JGI), a DOE Office of Science User … For that reason, its genome was sequenced by the JGI in 2009 and it is considered to be a Flagship Plant. By …
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JGI Earth Month: Wetlands Work in #TenHundredWords
… April marks both the 50th celebration of Earth Day on April 22, and DNA Day on April 25. As both Earth and DNA are close … Research (SCGSR) program . Her research project, “Microbial Community Structure and Methane Production in California’s … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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Complete genome sequence of the thermophilic, hydrogen-oxidizing Bacillus tusciae type strain (T2T) and reclassification in the new genus, Kyrpidia gen. nov. as Kyrpidia tusciae comb. nov. and emendation of the family Alicyclobacillaceae da Costa and
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Complete genome sequence of Planctomyces brasiliensis type strain (DSM 5305T), phylogenomic analysis and reclassification of Planctomycetes including the descriptions of Gimesia gen. nov., Planctopirus gen. nov. and Rubinisphaera gen. nov. and emended
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The Case for Conservation
… moss Ceratodon purpureus is a short plant with a complex genome . Now, high-quality reference genome sequences of the male and female plants, each … a single set of chromosomes, are available. The genome assemblies highlight the multiple advances in … The work conducted by the U.S. Department of Energy Joint Genome Institute was supported by the Office of Science of …
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Mining Metagenomes for Cas Proteins
… possible by mining the datasets in the Integrated Microbial Genomes and Microbiomes (IMG/M) suite of tools managed by … acids (aa) in size, half that of previously known class 2 CRISPR enzymes that are typically 950—1400 aa. They were … discovery of thermostable Cas9 genes . The work also used resources at the National Energy Research Scientific …
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Virus-Microbe Interactions of Mud Island Mangroves
… user facilities. Baker had worked with the JGI through a Community Science Program (CSP) proposal, and Rambo’s …
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From Berkeley to Binghamton: Tracking Strawberry Evolution
… In the summer of 2015, Adam Session was a postdoc working at the DOE Joint Genome Institute with Dan Rokhsar, who also holds a joint … known as polyploidy. The multiple copies arise from past genome duplication, which occurs in two basic ways. In …
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Genome sequences of key bacterial symbionts of entomopathogenic nematodes: Xenorhabdus cabanillasii DSM17905, Xenorhabdus ehlersii DSM16337, Xenorhabdus japonica DSM16522, Xenorhabdus koppenhoeferii DSM18168, and Xenorhabdus mauleonii DSM17908
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
… to date. This paper  is the cover article for the April 2024 issue  of  Nature Plants .  “We wanted to better … scientist at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … candidates for genetic engineering. Our hope is that the community at large will follow that up,” Serrano said.  This …
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