Results

Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… proposal calls to the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … to do a SIP-fueled meta-analysis with a member of his lab, Abigayle Simpson. They found that although 20 years of SIP … for a SIP-focused workshop at the JGI in the fall of 2024. “ We wanted to get into the nitty gritty with the people …
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The genome of Polaromonas naphthalenivorans strain CJ2, isolated from coal tar‐contaminated sediment, reveals physiological and metabolic versatility and evolution through extensive horizontal gene transfer
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High-quality permanent draft genome sequence of Ensifer sp. PC2, isolated from a nitrogen-fixing root nodule of the legume tree (Khejri) native to the Thar Desert of India
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Conserved genomic collinearity as a source of broadly applicable, fast evolving, markers to resolve species complexes: A case study using the lichen-forming genus Peltigera section Polydactylon
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Cold adaptive traits revealed by comparative genomic analysis of the eurypsychrophile Rhodococcus sp. JG3 isolated from high elevation McMurdo Dry Valley permafrost, Antarctica
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Genome sequence of the mud-dwelling archaeon Methanoplanus limicola type strain (DSM 2279T), reclassification of Methanoplanus petrolearius as Methanolacinia petrolearia and emended descriptions of the genera Methanoplanus and Methanolacinia
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Genome Sequence of Kosmotoga olearia Strain TBF 19.5.1, a Thermophilic Bacterium with a Wide Growth Temperature Range, Isolated from the Troll B Oil Platform in the North Sea
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Complete genome sequence of Geobacillus thermoglucosidasius C56-YS93, a novel biomass degrader isolated from obsidian hot spring in Yellowstone National Park
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Permanent draft genome sequence of Desulfurococcus mobilis type strain DSM 2161, a thermoacidophilic sulfur-reducing crenarchaeon isolated from acidic hot springs of Hveravellir, Iceland
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An Enzyme System to Help Catalyze Bioproduction of Plastic
… they worked with the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … how such inter-Facility collaborations through the Genomes to Structure and Function focus area of the JGI’s … contexts.  “That allows us now to really start thinking about the structure-function relationship. What could we do, …
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Accelerating Metagenomics Discoveries with Deep Learning
… biologist at the US Department of Energy (DOE) Joint Genome Institute (JGI), presented on generating vector … algorithm — a convolutional neural network, called  ResNet 34   — in order to vectorize protein sequences. Sevim is part of the JGI Genome R&D Group and is one of more than 100 scientists and …
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Katherine Louie
… Dr. Louie joined the JGI in 2014 to develop the metabolomics program, and in 2019 became … in maize (Zea mays). Scientific Reports. 2021. doi:10.1038/s41598-020-79320-z 3. Louie KB, Kosina SM, Hu Y, Otani H, de … Sciences and Chemical Engineering.  DOI: 10.1016/b978-0-12-409547-2.14834-6 4. Roth MS, Gallaher SD, Westcott DJ, Iwai …
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