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Genome Sequences of Industrially Relevant Saccharomyces cerevisiae Strain M3707, Isolated from a Sample of Distillers Yeast and Four Haploid Derivatives
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Integrating chromatin conformation information in a self-supervised learning model improves metagenome binning
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Eelgrass Proves to Be Much Younger Than We Thought
… of Energy Joint Genome Institute, a DOE Office of Science User Facility at Lawrence Berkeley National Laboratory, … events.  Looking ahead, scientists can use this information to assess what specific traits make older … a US Department of Energy Office of Science User Facility, is supported by the Office of Science of the …
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Marine DNA methylation patterns are associated with microbial community composition and inform virus-host dynamics
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Ben Bowen
… supporting the DOE’s Biological and Environmental Research user community in their bioenergy and environmental … Arrayed Analysis Toolkit: analyzing spatially defined samples using mass spectrometry imaging. Analytical …
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JGI Early Career Researchers Featured in mSystems Special Issue
… to reconstruct individual microbes in an environmental sample beyond the tried-and-true method of traditional … microbes. A comprehensive map of viruses including host information, Roux says, would be the foundation upon which … Laboratory (Berkeley Lab). JGI is a DOE Office of Science user facility at Berkeley Lab.   … The U.S. Department of …
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Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea
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Information theory and machine learning illuminate large‐scale metabolomic responses of Brachypodium distachyon to environmental change
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Synthetic Biology Informatics Group
Gate methods SynTrack and associated tools, which track samples through the JGI’s Synthetic Biology pipeline as well …
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Plant-Microbial Interactions Group
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Sequencing Technologies
… to enable biological discovery by the JGI and external DOE users. Adopting the latest  sequencing technologies has … output while significantly lowering costs. Staff process samples, perform quality checks, and prep libraries for … the JGI’s genomic capabilities are ready and applicable to users.  … Sequencing Technologies Lead …
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … produce antibiotics. Still, the team estimates that genomic information is only available for a fraction of extant … genomes (MAGs) reconstructed from sequenced environmental samples in a previous study. The team analyzed over 80,000 …
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