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Over the next decade, the JGI’s single cell genomics and metagenomics capabilities were harnessed in several Lab … the dispersed oil.   Terry Hazen on Oceanospirillales microbes   Terry Hazen Perspective on the Deepwater Horizon …

… metabolism.  DAN: Hello, and welcome back for Episode 7 of the Natural Prodcast. It’s been about a month now since … on DNA sequencing and synthetic biology. But also the metagenomics and gut microbiome, as I think that it’s like a … enediynes to the market in 2001 with a drug called Mylotag. Wyeth was later acquired by Pfizer in 2009. So, a …

… use to conduct a similar type of search in microbial and metagenomic databases. In this case, the machine “learned” to … the algorithm, the search tool combed through more than 70,000 microbial and metagenome datasets, ultimately identifying more than 10,000 …

Description Deliverables Cycle Time FY25 Q1  (median/75th percentile*) DNA Synthesis Constructs <5kb in size … metabolites and unidentified features in spectra. 167/214 Metagenome Metatranscriptome Environmental transcript sequence Assembly, annotation ( IMG/M ), mapping 273/273 Metagenome Cell Enrichments Obtained by physical separation of …

… in the journal Science . It detailed how they’d used metagenomics to identify over 27,000 microbial genes. The data from that study is now used …

… green sharpshooter. In 2012, single cells isolated from the microbes found in the oil plume from Deepwater Horizon oil … of the tree of life. Used in tandem over the years, metagenomics and single cell genomics have afforded JGI users … microbial lineages from a variety of environments. In 2017, the first New Lineages of Life (NeLLi) workshop was held, …

… the genomes and predict the metabolic abilities of these microbes. The Impact This study illustrates how the research … They also used the tool to predict possible functions from 733 metagenome-assembled rumen genomes. Finally, they used the …

… year’s list features 6,849 individual researchers from 67 countries. Those from the JGI whose publications rank in … were all instrumental in the development of the Novel Metagenome Protein Families (NMPF) Catalog . Published in the … the study highlights the vast functional diversity of microbes by looking at protein function within them. …

… nitrogen-metabolizing enzymes are abundant, and to which microbes they belong. This study provides further insights … to identify proteins, the team compiled DNA sequences (metagenomes) and messenger RNA sequences (transcriptomes) from … work was supported by the Czech Science Foundation (18- 25706S and 20-02022Y), by the Ministry of Education, Youth and …

As warm-adapted microbes edge polewards, they’d oust resident tiny algae. … they sequenced DNA ‘marker’ gene sequences to identify the microbes. And in order to determine what genes the algae … cool intermediate to the ocean’s extremes of about 28° and 97° Fahrenheit. “The study authors point to this fundamental …