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Over the next decade, the JGI’s single cell genomics and metagenomics capabilities were harnessed in several Lab … the dispersed oil.   Terry Hazen on Oceanospirillales microbes   Terry Hazen Perspective on the Deepwater Horizon …

… on DNA sequencing and synthetic biology. But also the metagenomics and gut microbiome, as I think that it’s like a … enediynes to the market in 2001 with a drug called Mylotag. Wyeth was later acquired by Pfizer in 2009. So, a … genome, the genome predicts they often can produce around 30 – more than 30 compounds. So, this was a complete …

… use to conduct a similar type of search in microbial and metagenomic databases. In this case, the machine “learned” to … search tool combed through more than 70,000 microbial and metagenome datasets, ultimately identifying more than 10,000 … By the numbers, the new approach detected inoviruses in 3,609 (6 percent) of the 56,868 microbial genomes and 2,249 …

… change etc) and structural rearrangements, alignment files 384/454 Fungal Transcriptome RNA for expression profiling … metabolites and unidentified features in spectra. 167/214 Metagenome Metatranscriptome Environmental transcript sequence Assembly, annotation ( IMG/M ), mapping 273/273 Metagenome Cell Enrichments Obtained by physical separation of …

… in the journal Science . It detailed how they’d used metagenomics to identify over 27,000 microbial genes. The data …

… green sharpshooter. In 2012, single cells isolated from the microbes found in the oil plume from Deepwater Horizon oil … more than 200 microbial genomes that were mapped to nearly 30 major previously uncharted branches of the tree of life. Used in tandem over the years, metagenomics and single cell genomics have afforded JGI users …

… researchers recently compiled a list of with more than 8,300 organisms from multiple sources, including the U.S. … the genomes and predict the metabolic abilities of these microbes. The Impact This study illustrates how the research … also used the tool to predict possible functions from 733 metagenome-assembled rumen genomes. Finally, they used the …

Congratulations to the 2023 Highly Cited Researchers from the JGI recognized for their … were all instrumental in the development of the Novel Metagenome Protein Families (NMPF) Catalog . Published in the … the study highlights the vast functional diversity of microbes by looking at protein function within them. …

… for a stressed typical plant, one that does what’s called C3 metabolism, named for a 3-carbon compound that plays an essential role. But other … yuccas is that there are closely related species that use C3 and CAM. ALISON: But plants don’t need to be restricted …

… nitrogen-metabolizing enzymes are abundant, and to which microbes they belong. This study provides further insights … to identify proteins, the team compiled DNA sequences (metagenomes) and messenger RNA sequences (transcriptomes) from … fungal enzymes actually outnumbered bacterial enzymes 3-to-1. Additionally, the fungal enzymes the team found …

As warm-adapted microbes edge polewards, they’d oust resident tiny algae. … they sequenced DNA ‘marker’ gene sequences to identify the microbes. And in order to determine what genes the algae …