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Open Frameworks Training the Next Generation of Scientists
… in 15 individual classrooms across the country, training 316 students in fungal biology, bioinformatics, and … (Module 2), Sample Collection and Processing (Module 3), Data Analysis in KBase (Module 4), and Conclusions and … supported by the JGI Director’s Science Program award #509937. SB was supported by the National Science Foundation …
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JGI@25: Following Fungi that Pry Apart Plant Polymers
… genomics and transcriptomics to discover another advantage these fungi wield: the capacity to form enzyme …
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Supercharging SIP in the Fungal Hyphosphere
… the auspices of the U.S. DOE under Contract DE-AC52-07NA27344. The work conducted by the U.S. Department of Energy Joint Genome Institute ( https://ror.org/04xm1d337 ), a DOE Office of Science User Facility, is supported by …
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Katherine Louie
… products. Proc Natl Acad Sci U S A. 2021;118. doi:10.1073/pnas.2019855118 2. Murphy KM, Edwards J, Louie KB, Bowen … in maize (Zea mays). Scientific Reports. 2021. doi:10.1038/s41598-020-79320-z 3. Louie KB, Kosina SM, Hu Y, Otani H, de Raad M, …
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The Surprising Structure of a Shrub Willow Sex Chromosome
… some songbird W chromosomes — suggest that they are advantageous enough to have evolved multiple times independently. … by the National Natural Science Foundation of China (31590821, 31561123001, 31500502, 41871044), National Key Research and …
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Virus Discoveries that Keep Getting Bigger
… Sequence-based studies — from metagenomics to single-cell work — have quickly accelerated … virus reference genomes to search for giant viruses in metagenomic reads. Another approach, single cell methods — … genome, to sift for snippets of giant viruses in metagenomes. This has been useful in marine environments, …
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Alabama A&M Interns Access An Abundance of Knowledge
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Taking Stock of the Known and Unknown Microbial Space
… Metagenomic datasets could help map out microbial diversity … biofuels and bioproducts, and medicine. Wading through 30 years of sequencing data, the team composed of Wu, … on the JGI’s  Integrated Microbial Genomes & Microbiomes (IMG/M) database. In their analysis, the team found that …
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A Community Resource for Secondary Metabolite Researchers
… public database for the research community. With more than 13 million BGCs in the catalog at the time of publication, it … within the Integrated Microbial Genomes and Microbiomes (IMG/M) system known as IMG-ABC. That portal contained … and secondary metabolites information from isolate and metagenome data.   The SMC ( smc.jgi.doe.gov ) is designed …
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JGI on the 2020 Highly Cited Researchers List
… on the JGI’s  Integrated Microbial Genomes & Microbiomes (IMG/M) platform. Nikos Kyrpides and  Simon Roux are part of … to help researchers assess and improve the quality of metagenome-assembled viral genomes. The paper appeared in  … consortium, they  conducted a large-scale comparison of 135 fungal sequenced genomes to understand how plants and …
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Exploring Possibilities: 2022 JGI-UC Merced Interns
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New Research Sheds Light on Diversity in the Deep Sea
… at Lawrence Berkeley National Laboratory, contributed metagenomic sequencing to the study as well as  genome … on the JGI’s  Integrated Microbial Genomes & Microbiomes (IMG/M) portal. The study,  published in the  Microbiome … funded by the US-National Science Foundation grants OCE-0728391, OCE-0937404, OCE-1558795 to A-L.R, and OCE-2049478 and …
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