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… and longtime JGI collaborator Sabeeha Merchant’s group. In 2011, they inventoried a swath of blueprints to find parts … The end result was a list of genes, termed  The GreenCut2 Resource . It details 597 genes coding for proteins that … apt name for a Jane Doe After screening hundreds of GreenCut2 proteins, Blaby-Haas emerged with several ideas of …

… in this publication during her summer internship in 2018. She selected one of the projects posted by JGI fungal … a virtual four-day data carpentry workshop for the incoming 2021 JGI-UC Merced interns to help familiarize incoming …

… the discovery of more than 30,000 DGRs in this analysis, a 20-fold increase over what was previously known, throws open … sampled all at once from the same environment, called metagenomes. Why? Simon Roux, who led the research team and is … of the U.S. Department of Energy under contract no. DE-AC02-05CH11231. This research used resources of the National …

… plants did you all look at? Avinash: We started off with 12 plants, which are JGI Flagship Plants, mostly related to … we are looking at 18 different species, which included over 2000 RNA Seq libraries. As I previously mentioned, this is … to standardize the experimental protocols. Then, in 2020, seven more groups joined the project to contribute to …

… the JGI’s  Integrated Microbial Genomics and Microbiomes (IMG/M) system. The Program aims to better understand the … CheckV , which assesses the quality and completeness of metagenome-assembled viral genomes ( Nature Biotechnology , 2021), geNomad , a tool for identifying mobile genetic …

In the summer of 2015, Adam Session was a postdoc working at the DOE Joint …

During the summer of 2021, 13 interns from UC Merced spent eight weeks working … … Evaluation of Binning Tools for Microbial Eukaryotes in Metagenomes … Functional exploration of Phage Impact on … of Rice and Arabidopsis Roots … Making Big Data Metagenomic Clustering Scalable … Cataloging Lineage Specific …

… and the fact that I got to do a project involving over 12,000 fungal genomes was just really, really exciting for me … it’s great to see how far the field has come from the early 2000s. Josue Duque : One of the best parts about interning …

… version of a specific chemical, where ordinary Carbon-12 atoms are swapped for the heavier, non-radioactive isotope … easier to compare?” said Malmstrom, who worked with JGI Metagenome Program head Emiley Eloe-Fadrosh to host … this was the first workshop of its kind on SIP metagenomics,” Malmstrom said.  Increasingly, efforts like …

… one constant for the Joint Genome Institute. On July 1, 2020, that all changed. Ray’s vigilant stewardship as JGI’s … one constant for the Joint Genome Institute. On July 1, 2020, that all changed. Ray’s vigilant stewardship as JGI’s …