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In marine Bacteroidetes the bulk of glycan degradation during algae blooms is mediated by few clades using a restricted set of genes
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River microbiomes from around the world: Kelly Wrighton
… have a massive undertaking: sequencing the world’s river microbiomes. And they’re using team science to do it.   …
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DAP-seq Drives Robust Mapping of Gene Regulation
… Multi-species assays yield an unprecedented view of plant evolution and adaptation.    Understanding how genes … stricter filtering criteria provides a robust community dataset of improved quality; deep insights identify the most … binding maps with single-cell RNA profiles, researchers can pinpoint which transcription factors regulate specific …
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Micro-Scale Applications Group
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A Revamped Amplification Method that Enables Nearly Complete Single-Cell Genomes
… sequencing. Shotgun metagenomic sequencing takes much less time than its single-cell counterpart. In this approach, DNA … together, they found most bacterial genomes from water and soil communities were at least 80% complete when studied … studied with MDA. With the introduction of PTA, JGI users can get more complete single-cell genomes more consistently. …
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Homoeolog expression divergence contributes to time of day changes in transcriptomic and glucosinolate responses to prolonged water limitation in Brassica napus
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Mining Metagenomes for Cas Proteins
… Short Palindromic Repeats (CRISPR) associated proteins that can target single-stranded DNA (ssDNA). The discovery was made possible by mining the datasets in the Integrated Microbial Genomes and Microbiomes (IMG/M) suite of tools managed by the U.S. … Datasets …
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Getting to the core of the gut microbiome
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Publication Policy
… data produced at the facility, provided this is done in a timely fashion. The publications resulting from such efforts … expect authorship to include all those contributing significantly to the work. The intent of this policy and the lists … to the work, and to identify those who contributed significantly.    Authorship Guidelines JGI will provide all users …
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Improved genome assembly and evidence-based global gene model set for the chordate Ciona intestinalis: new insight into intron and operon populations
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Transcriptomic Data Sets for Zymomonas mobilis 2032 during Fermentation of Ammonia Fiber Expansion (AFEX)-Pretreated Corn Stover and Switchgrass Hydrolysates
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EARLY FLOWERING 3 and Photoperiod Sensing in Brachypodium distachyon
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