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Recent Activity in Expanding Populations and Purifying Selection Have Shaped Transposable Element Landscapes across Natural Accessions of the Mediterranean Grass Brachypodium distachyon
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Building Sphagnum Genomic Resources
… model system focused on carbon cycling studies, rather than for food or fuel applications. The Impact Sphagnum’s impact … cycling is a carbon flux regulator since sulfate-reducing microbes prevent methane production by routing the carbon … oxidation. The findings lead them to speculate that these microbes could use the same pathway for either sulfur …
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RECAP: Multi-Omic Journeys with 2023 JGI Annual Meeting Keynotes
… is wild,” and admitting, “friends give me a hard time for that.” But the title brought him back to his first … career progressed, Hungate has gotten more interested in microbes with the potential to impact global climate change, … climate change, we need to understand the ecology of those microbes.” And to understand those microbes, he is most …
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Richard Fox
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Webinar: PhycoCosm Tutorial
… again how did you pick genomes to be on the genomes portal? For the taxa I work on, there are 7 genomes on NCBI but your portal has only 2 of them. A: Watch the video (above) for the answer provided by Sara 4.  Q(uestion): Are all CSP … do we go about getting it in your system? A: I think the best way is to contact us for multiomics visualization as we …
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Innovative Technology Improves Our Understanding of Bacterial Cell Signaling
… in regulating microbial cellulose production and biofilm formation, which affects a number of environments, including … also regulates enzymes involved in cellulose production in microbes, these biosensors may eventually lead to ways to … in bacterial lysates without further purification. The best biosensor candidates were then used to develop a …
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How Filamentous Fungi Sense Food
… Science A team led by researchers at the University of California, Berkeley used a multi-omics approach to reconstruct … hemicellulose. The Impact N. crassa is the model organism for filamentous fungi, all of which contain a wide array of … Filamentous fungi are like handymen who show up at a job site for a task that requires a flathead screwdriver …
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VEGA Symposium
… Ecogenomics” community to foster discussion on how to best capture and characterize uncultivated viral diversity, … of virus-host interactions and phage-based technologies for microbiome manipulation, the VEGA symposium represents a unique opportunity for students and researchers in the viral ecogenomics field …
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The exceptional form and function of the giant bacterium Ca. Epulopiscium viviparus revolves around its sodium motive force
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Mining Metagenomes for Cas Proteins
… led by Jennifer Doudna’s group at the University of California (UC), Berkeley, which is also affiliated with … to be unearthed in sequencing and analyzing uncultivated microbes. Summary The CRISPR-Cas system is an immune … viruses and phages. In the event of a new infection, the microbes use the genetic information encoded in CRISPR …
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Designer DNA: JGI Helps Users Blaze New Biosynthetic Pathways
… PI on this project. “I view the program as an excellent platform to build collaborative research initiatives.” Yasuo … CRISPRi ). Now, they’ll be able to further explore how best to use it in order to optimize C. autoethanogenum as a … on thiolases, a superfamily of enzymes found only in microbes, which make carbon-carbon bonds. This ability is …
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Charting Progress toward Professional Goals
… next generation of STEM professionals. Students can apply for internships and work onsite with an experienced … while Oliver Benelli applied through the University of California's  CalTeach initiative. During their time at the … spent a lot of effort, like building my code base, running jobs that take like two days to, like, go through working …
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