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The JGI Data Portal: Improving User Experience
… human-centered, agile collaboration between the JGI and the information technology company Truss has resulted in the JGI … “For thousands of scientists around the world, the JGI Genome Portal is a critical resource — it provides access to … more than 13 petabytes of data, accessible through the Genome Portal. “The task of making data more findable and …
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The More the Merrier: Making the Case for Plant Pan-genomes
… Brachypodium model system traces polyploid genome evolution. Flowering plants abide by the concept, “the more the merrier,” with respect to their genomes. In their base state, they are diploids with two … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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Cultivating Symbiotic Antarctic Microbes
… cultures reveal they are symbionts and not free-living organisms. The Science Researchers employed multiple … consequences of microbe-microbe interactions. Using metagenomes recovered directly from environmental samples and … dependent on the other for required nutrients—is genome size. The obligate symbiont’s genome is often reduced …
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Dan Rokhsar
… Dr. Rokhsar joined the JGI in 2000 as the founding Associate Director for … human chromosomes. After successful completion of the Human Genome Project, Professor Dr. Rokhsar ’s team has continued to … AB in Physics, Princeton University, NJ MS in Theoretical Physics, Cornell …
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New Research Finds Flagella in the Terrestrial Roots of Marine Bacteria
… s ditched their flagella and other traits when migrating back to the ocean. The Science Scientists have … structures that enable organisms to swim around. However, genome and metagenomic sequencing conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility at …
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For the Tiniest Archaea, A Genomic Switch of Friend or Foe
… Meta-omics datasets show that CRISPR-Cas systems determine mutualism or parasitism between some archaeal hosts and … are abundant and yet exceptionally small, with mini genomes to match. As a result, they cannot process all of … microorganisms had a close relationship. Then, using metagenomes and metatranscriptomes generated by the U.S. …
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JGI Part of Berkeley Lab Team Awarded Best Use of HPC in Life Sciences
… Multiple 2021 HPCwire Awards ” on the Berkeley Lab Computing Sciences site. Lawrence Berkeley National Laboratory … Research Scientific Computing Center (NERSC), the DOE Joint Genome Institute (JGI), and the Energy Sciences Network … went to the Berkeley Lab team comprised of JGI and ExaBiome Project team, supported by the DOE Exascale Computing …
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JGI announces final round of 2022 Functional Genomics awardees
… research from potential users who need help translating genomic information into biological function. Through our CSP Functional Genomics call , we look for projects that will leverage the JGI’s DNA synthesis and omics capabilities to enhance understanding of gene and genome function.  Below find a list of the final six …
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The Expanding Universe of Methane Metabolisms in Archaea
… Metagenome-assembled archaeal genomes provide new insights into an ancient metabolism. … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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Marchantia Pangenome Highlights Adaptive Nature of Plant Lineages
… Understanding the shared genetic toolkit of ancestral and present-day … researchers focused on the full composition of genes, or pangenome, of the model plant  Marchantia polymorpha. Commonly … plant lineages in the  Open Green Genomes Initiative , a project supported by the U.S. Department of Energy (DOE) …
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Massie S. Ballon
… and collaborators.  Ms. Ballon is a molecular biology-trained science communicator with extensive experience shaping compelling narratives for diverse audiences. In her prior role as a … Click to see the coverage of JGI-enabled science highlighting user research, newly accepted proposals, and outreach …
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JGI@25 RECAP: 2022 Annual Meeting features historical perspectives on JGI’s 25 years
… the JGI’s 25th anniversary celebration, the 2022 Annual Meeting featured speakers who shared a look back at the JGI’s … from its beginnings in the sequencing for the Human Genome Project out to the future of the institution. Their talks …
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