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Danielle operates the single-cell genomics pipeline for JGI collaborators. This work combines custom flow cytometric analysis, cell sorting, genome amplification, PCR screening, and 16S sequencing. She also develops novel flow cytometry protocols for targeted recovery of …

Park to study how cyanobacteria are living, communally, in microbial mats. Along the way, they’ve encountered … new technologies, and made a few discoveries about the microbial mat denizens.  …

… for the data management infrastructure of the Integrated Microbial Genomes (IMG) family of systems. Before joining … TBK, Mukherjee S et al. IMG/VR v4: an expanded database of uncultured virus genomes within a framework of extensive … V, Szeto E, Palaniappan K, and Chu K. Maintaining a Microbial Genome & Metagenome Data Analysis System in an …

… the modified compound will have heavier DNA or RNA, and SIP techniques leverage this to untangle which microbes ate the … community-driven standards from the Genomic Standards Consortium, Wilhelm and Simpson assembled a team of researchers … few decades of SIP experiments. “I’m looking forward to seeing that come through, predicated on these data …

R570 has been  published in  Nature by an international consortium. With the genetic code of sugarcane, researchers … pieces from multiple boxes, including some duplicates, to sort through in order to form a single cohesive image. An … and assembling the genome required a custom pipeline and techniques. High quality primary assembly not only includes …