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Coral life history and symbiosis: Functional genomic resources for two reef building Caribbean corals, Acropora palmata and Montastraea faveolata
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JGI@25: Roots of a Mutualist Relationship
… In honor of the JGI's 25th anniversary in 2022, we have revisited a … with the poplar, a JGI Flagship Genome and the first tree to have its genome sequenced. Having this first genome … Laccaria bicolor on MycoCosm … Laccaria bicolor has a symbiotic relationship with poplar …
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Learning to Look
… Machine learning approach significantly expands inovirus … “Where’s Waldo?” readers need to look for a number of distinguishing features. Several characters may be … case, the machine “learned” to identify a certain type of bacterial viruses or phages called inoviruses, which are …
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Viral dark matter and virus–host interactions resolved from publicly available microbial genomes
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Enriching public descriptions of marine phages using the Genomic Standards Consortium MIGS standard
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Computationally Classifying Fungal Lifestyles
… Machine learning methods were applied on sequenced fungal … genomes to classify gene families. The Science As a proof of concept, researchers developed an algorithm that … (Berkeley Lab), has generated a more accurate phylogenetic tree tracking the evolution of  Dothideomycetes fungi. The  …
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The fungus that made itself at home
… Retracing how the dry rot Serpula lacrymans adapted to a new … interested in harnessing the brown rot Serpula lacrymans towards breaking down plant mass for conversion to sustainable, alternative biofuels and bioproducts. This study lends insights on how the … This research was supported by the University of Oslo and Norwegian …
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Streamlining Regulon Identification in Bacteria
… RIViT-seq technology could speed up associating transcription factors with their target genes. The Science Regulons are a group of genes that can be turned on or off by the same regulatory … one type of RNA polymerase responsible for each gene. These bacterial RNA polymerases are made up of a core enzyme …
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RECAP: Keynote Speakers Talk Innovation at 2022 JGI Annual Meeting
… The JGI was honored to host some of the brightest minds in genetics … in her 2020 Nobel Prize in Chemistry. She then pivoted towards the future and shared ways that her team is looking … mean for these vast algal blooms. Their work takes a view across many scales: from natural blooms in the ocean, …
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Bacterial Diversity in the Cecum of the World’s Largest Living Rodent (Hydrochoerus hydrochaeris)
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Bacterial Microcompartments
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Spatially structured bacterial interactions alter algal carbon flow to bacteria
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