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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
… In honor of the JGI's 25th anniversary in 2022, we have revisited a … was released to the public in a highly-cited 2006 publication in the journal Science . This provided a … and inspire next-generation researchers while preserving biodiversity and yielding demonstrable economic benefits. …
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JGI Contributes Eight to 2023 Highly Cited Researchers list
… influence in their chosen field or fields through the publication of multiple highly cited papers during the last … the October issue of Nature, the study highlights the vast functional diversity of microbes by looking at protein function within …
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New Research Sheds Light on Diversity in the Deep Sea
… get any sunlight, and yet they still support a unique array of microorganisms adapted to living in extreme conditions. … to better understand how these hydrothermal ecosystems function in such extreme conditions. They identified 511 new … are available on the JGI’s  Integrated Microbial Genomes & Microbiomes (IMG/M) portal. The study,  published in the  …
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Multi 'omics comparison reveals metabolome biochemistry, not microbiome composition or gene expression, corresponds to elevated biogeochemical function in the hyporheic zone
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GenomeOcean Leverages AI to Decode Nature’s Secret Language
… biological sequences such as biosynthetic gene cluster structures. Zhong Wang, a computational biologist at … foundation models. However, the sheer vastness of microbial diversity is not covered by reference genomes.”  Most of the … new discoveries in microbial genome structures and functions. Wang worked with the MetaHipMer team with …
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Functional Genomics of Novel Secondary Metabolites from Diverse Cyanobacteria Using Untargeted Metabolomics
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Distinct Microbial Assemblage Structure and Archaeal Diversity in Sediments of Arctic Thermokarst Lakes Differing in Methane Sources
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Fungal Friends or Foes in Plant Roots
… host health. The Science Researchers compared the genomes of fungi that colonize Arabidopsis thaliana roots with … They play key roles in maintaining the plant’s health and diversity, which can in turn boost yields for both food and … Fungal Genomes project can enable studies of plant root microbiome and other microbiomes by providing reference …
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2024 Progress Report
… the DOE Systems Biology Knowledgebase (KBase), the National Microbiome Data Collaborative (NMDC), and Berkeley Lab … for a sustainable bioeconomy. Mission  As a U.S. Department of Energy Office of Science user facility, we provide advanced genomic … processed 13,700 metabolomics samples With our users, 247 publications were published   …
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Evolutionary constraint facilitates interpretation of genetic variation in resequenced human genomes
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Genetic and Functional Diversity Help Explain Pathogenic, Weakly Pathogenic, and Commensal Lifestyles in the Genus Xanthomonas
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Diversity and function of methyl-coenzyme M reductase-encoding archaea in Yellowstone hot springs revealed by metagenomics and mesocosm experiments
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