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Large-scale genomic analyses with machine learning uncover predictive patterns associated with fungal phytopathogenic lifestyles and traits
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Eelgrass Proves to Be Much Younger Than We Thought
… form of another species, so the scientists had to use the genome itself.   Approximately 67 million years ago, the … locations.  One group investigated changes in protein sequences, while others analyzed single point mutations … Sequencing Program (CSP 502951, 2016, Population and evolutionary genomics of host–microbiome interactions in …
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A Community Resource for Secondary Metabolite Researchers
… more than 13 million BGCs in the catalog at the time of publication, it is the largest repository of BGC sequence … over 1.3 million publicly available bacterial and archaeal genome and contig sources.  The Impact Secondary metabolites … agriculture. This comprehensive public repository of BGC sequences that come pre-annotated using multiple commonly …
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Doubling Down on Known Protein Families
… online Oct. 11, 2023 in  Nature highlights the vast array of functional diversity of microbes through a novel approach … of scientists at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … the process hinges on referencing to existing genome sequences.  Some of these proteins are what the scientists …
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A Novel Freshwater to Marine Evolutionary Transition Revealed within Methylophilaceae Bacteria from the Arctic Ocean
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Lower viral evolutionary pressure under stable versus fluctuating conditions in subzero Arctic brines
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The recent evolutionary rescue of a staple crop depended on over half a century of global germplasm exchange
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Comparative genomics reveals electron transfer and syntrophic mechanisms differentiating methanotrophic and methanogenic archaea
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Comparative genomics reveals mechanism for short-term and long-term clonal transitions in pandemic Vibrio cholerae
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From Intern to Published Scientist: The Journey of a JGI-UC Merced Intern
… determination. Rhondene Wint, an alumna of the DOE Joint Genome Institute (JGI)-UC Merced internship program and … current PhD student, reached this milestone with a recent publication in Molecular Biology and Evolution . “It’s my … making proteins likely factors into why fungi have been so evolutionary and ecologically successful,” Wint said. “Fungi …
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JGI@25: Strengthening Soybean
In honor of the JGI's 25th anniversary in 2022, we have revisited a … and energy advantages explain why soybean is a flagship genome of the JGI’s Plant Program.    While soybean has … the first legume species with a published complete draft genome sequence. At the time, the vital global source of …
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A Viral Ecogenomics Framework To Uncover the Secrets of Nature’s “Microbe Whisperers”
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