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What Happens Underground Influences Global Nutrient Cycles
… features prominently among the eleven proposals selected with four focused on biofuels and bioproducts. For example, … that may be relevant to both algae and land plants.  Within the biogeochemistry group, one of the four proposals … facility that accelerates scientific discovery and pioneers new capabilities to understand biological and environmental …
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JGI Workshop at SIMB NP Meeting
Jan. 7: New Capabilities to Study Secondary Metabolism   Although … of Science User Facility, has been developing and applying new genomics capabilities that address these issues. Check …
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Exploring the Diversity of the American Prairie’s Switchgrass
… the plant’s varying traits — height, biomass, hardiness to cold, etc. — to its genes. The undertaking took shovels, …
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David Goodstein
With a background in experimental and computational surface … the Phytozome Plant Genomics web portal. … BS in Physics, New York University, NY M.S in Physics, Cornell University, … plant genomics.      Nucleic Acids Research 40, D1178. Publications … Scientific Advisory Board member, InterMine …
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Overview of the Genomes OnLine Database (GOLD)
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How Filamentous Fungi Sense Food
… a job site for a task that requires a flathead screwdriver with a full toolbox including Phillips and specialty … to mention Allen wrenches. The fungi are similarly armed with a variety of PCWDEs to first break down the components … metabolized in filamentous fungi. The work also suggests a new approach to gene annotation, which then can be explored …
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Polar Phytoplankton Need Zinc to Cope with the Cold
… what makes polar photosynthesizers tick. He’s working with researchers at the U.S. Department of Energy (DOE) … in 2017, they published the first genome sequence of a cold-adapted microalga: the diatom Fragilariopsis cylindrus . … and his team then linked those species-level observations with data on microalgal communities across different ocean …
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Climate Change Threatens Base of Polar Oceans’ Bountiful Food Webs
… edge polewards, they’d oust resident tiny algae. The cold polar oceans give rise to some of the largest food webs … photosynthetic algae. But human-induced climate change , a new study suggests, is displacing these important cold-water communities of algae with warm-adapted ones, a trend that threatens to …
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A Community Resource for Secondary Metabolite Researchers
… an interactive public database for the research community. With more than 13 million BGCs in the catalog at the time of publication, it is the largest repository of BGC sequence … experience in developing a secondary metabolites portal within the Integrated Microbial Genomes and Microbiomes …
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Tracing the Evolution of Shiitake Mushrooms
New genomes highlight the diversity of white rot fungi in … on every continent besides Europe and Antarctica. A  new analysis takes a  genomic look at Lentinula samples from … sequences, this work expands the family tree for Lentinula. Within those samples, this study also tracks the enzymes …
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Scaling Up Existing Skill Sets
Merced Genomics Internship paired six UC Merced students with seven JGI researchers for bioinformatics internship … a great opportunity to study and learn something totally new during my Ph.D. What is/has been one of your favorite … of a research institute. It has also introduced me to a new career path of being a researcher in a national …
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JGI@25: Using Team Science to Build Communities Around Data
… together over 400 proposal collaborators and co-authors with affiliations at over 180 organizations in 29 U.S. … 85 proposal collaborators, 58 had never shared a proposal with each other prior to their involvement with the 1KFG … genomes that are both large and complex. The first publication of a genome generated by the OGG initiative — …
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