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DOE Metrics
… available hours. Other DOE Quarterly Metrics Q1 – Report on new computational developments for improving microbial, … [Download PDF] Q2 – Report on progress developing new experimental capabilities to analyze complex genomic or metagenomic datasets. [Download PDF] Q3 – Report on new computational approaches for the annotation of genomic …
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Nitrosococcus watsonii sp. nov., a new species of marine obligate ammonia‐oxidizing bacteria that is not omnipresent in the world's oceans: calls to validate the names ‘Nitrosococcus halophilus’ and ‘Nitrosomonas mobilis’
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A User-Centered Approach to Accessing JGI Data
… Users were previously limited to accessing data sets within groups, such as plants (via Phytozome) or fungi ( … are currently limited to: Public data: datasets associated with completed projects that are eligible for public … requires that users know about the FY Funding Year, and the publication status in addition to the public/private status. …
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Uncovering Novel Genomes from Earth’s Microbiomes
… of the microbial communities in the environmental samples without needing to isolate individual organisms, using … been associated with a host – with 23,000 MAGs. Modeling A New Path for Metagenomics Researchers Building upon these … researchers might not be willing to dive into an entirely new research field [metabolic modeling], but they might be …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… on microbial communities than ever before — especially with the prospect of meta-analyses boosted by AI and Machine … Generating these datasets opens up the possibility of new insights across ecosystems and research teams. Even … experiments.  Especially as machine learning and AI promise new ways of harnessing large datasets, JGI researchers and …
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VEGA Symposium
… in the viral ecogenomics field to exchange ideas with experts in the field, as well as with peers from other institutions. … Michael Baym, Harvard Medical School Laurence Ettwiller, New England Biolabs Kathryn Kauffman, University at Buffalo … (Zymo Research Corp) Vivek Mutalik (LBNL) Peter Weigele (New England Biolabs) …
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Doubling Down on Known Protein Families
… wilder than ever. Imagine researchers exploring a dark room with a flashlight, only able to clearly identify what falls … beam — worse, they didn’t even know how big the room is.  A new study  published online Oct. 11, 2023 in  Nature … But what kind of diversity might those ‘unknown unknowns’ hold?  The team started with 8 billion metagenome genes from …
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Novel heavy metal resistance gene clusters are present in the genome of Cupriavidus neocaledonicus STM 6070, a new species of Mimosa pudica microsymbiont isolated from heavy-metal-rich mining site soil
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Nigel Mouncey
… a long-standing interest in microbial genetics that started with his education and carried forward into his roles as a senior research scientist at Roche Vitamins, Inc. in New Jersey and DSM Nutritional Products in Switzerland, and … insecticides, fungicides, platform chemicals, cosmetics and new crop traits. Dr. Mouncey has successfully built …
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Statement on the Use of Genomics Data
… to balance its  Data Release and Utilization Policies with the DOE mandate to provide data access widely to the … are requested to be held until a specified date, or the publication date, whichever comes first. For nearly 40 … to consider policy changes in coordination with its stakeholder at the DOE Office of Biological and Environmental …
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Len Pennacchio
… to address wide-ranging questions existing in biology. He holds joint appointments as a Deputy Director at the DOE … areas. Additional duties of this Deputy include interacting with users seeking to exploit new genomic technologies and providing a vision for future …
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Complete genome sequence of the thermophilic, hydrogen-oxidizing Bacillus tusciae type strain (T2T) and reclassification in the new genus, Kyrpidia gen. nov. as Kyrpidia tusciae comb. nov. and emendation of the family Alicyclobacillaceae da Costa and
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