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Secondary Metabolites Program
… which are not essential for fundamental growth, provide critical advantages to the organisms producing them, and are often involved in defense, nutrient acquisition and communication. … The Secondary Metabolites Program targets the vast and underexplored reservoir of secondary metabolites …
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A Grass Model to Help Improve Giant Miscanthus
… has been published. Analysis of the genome sequence also provides insights into how the multiple chromosomes of … Understanding the evolution of polyploidy, and how genomes respond to extra chromosome and gene copies, will … Miscanthus breeding programs. The team also sequenced genomes of numerous wild Miscanthus lineages to better …
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The More the Merrier: Making the Case for Plant Pan-genomes
… Brachypodium model system traces polyploid genome evolution. Flowering plants abide by the concept, “the more the merrier,” with respect to their genomes. In their base state, they are diploids with two … flowering plants; at least once during their evolution, the genomes of flowering plants multiply. Over time, plants lose …
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Mining Metagenomes for Cas Proteins
… Cas14 proteins discovered from JGI’s IMG/M database and biochemically … possible by mining the datasets in the Integrated Microbial Genomes and Microbiomes (IMG/M) suite of tools managed by … the Howard Hughes Medical Institute. Support was also provided by the National Science Foundation, and the the …
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Shattering Expectations: Novel Seed Dispersal Gene Found in Green Millet
… Survey of Setaria's natural diversity reveals seed dispersal in … Program , sequences of several hundred green millet plant genomes were generated, though the final analyses focused on 598 individuals. Schmutz and his team assembled and annotated … at Lawrence Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean …
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JGI@25: From Life at the Extremes to Editing Genomes
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable … is a pioneer in metagenomic studies, recovering microbial genomes from biofilm samples at the Richmond Mine in Iron … nature was using it to do something important.” Related Publications:  A scoutRNA Is Required for Some Type V …
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A Model System for Perennial Grasses
… Panicum hallii genomes offer insights to drought tolerance. The Science Researchers have developed a genomic model to study drought tolerance in … var. hallii (99.2% complete) and P. hallii var. filipes (94.8% complete) and resequenced a host of natural collections …
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An Automated Tool for Assessing Virus Data Quality
… CheckV can help researchers assess virus sequence fragments and … recovered and identified from environmental samples (metagenomes). However, the quality and completeness of … (from environmental metagenome samples) from IMG/VR , a database that is part of the Integrated Microbial Genomes & …
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Doubling Down on Known Protein Families
… even know how big the room is.  A new study  published online Oct. 11, 2023 in  Nature highlights the vast array of … through the publicly available  Integrated Microbial Genomes & Microbiomes (IMG/M) database, they successfully crafted the Novel Metagenome …
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Year in Review: JGI’s 2018 Progress Report Available Now
… notable research and scientific collaborations in 2018. The cover is an image of Mono Lake, a saline soda lake east of … roles in the global sulfur cycle. Copies are available online – click here to go download one from the archive of …
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Game On: High School Students Drive Everglades Metagenomics Study
… a conference in Florida to discuss a JGI pilot project involving soil sampling in the Florida Everglades to help … able to receive training for the JGI’s Integrated Microbial Genomes & Microbiomes (IMG/M) portal for their sample … and organic carbon concentration. From Field Studies to Publication Together as a class, the students learned about …
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SPRUCE-ing Up Science
… his internship lessons on presentations to peatlands Travis Lawrence sits in his backyard in Tennessee — the birds … PhD dissertation defense presentations and beyond. In 2018, a friend of his wife’s passed along an open postdoc … fine tune his approach. “I got a lot of that from Zhong.”   Publication: Carrell AA et al. Habitat-adapted microbial …
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