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Enriching public descriptions of marine phages using the Genomic Standards Consortium MIGS standard
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Protocols
… Find protocols provided by JGI and the JGI user community below for DNA preparation tools, high molecular-weight DNA extraction … Tips for High Molecular Weight DNA extraction: … RNA Extraction Protocols: … iTag protocols: …
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Making a Lichen Together
… with the photobiont transferring part of its photosynthetically fixed carbon to the mycobiont. However, despite a … For the first time, a team has analyzed in parallel the genomes and transcriptomes of both partners to better … variation in its progeny. The study’s transcriptomic data also identified many genes potentially important for …
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GenomeOcean Leverages AI to Decode Nature’s Secret Language
… Trained on environmental data, a new JGI tool more accurately facilitates microbial genome discoveries. Unlocking the intricate details of … generated by JGI users, GenomeOcean also utilized large-scale metagenomic assemblies from three terabase-scale (Tb) … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User …
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The integrated microbial genomes (IMG) system in 2007: data content and analysis tool extensions
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Twenty-five years of Genomes OnLine Database (GOLD): data updates and new features in v.9.
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A Complex Confection Decoded: Sugarcane Reference Genome
… was the last major crop without a reference quality genome and now crop researchers can work toward advancing … Additionally, insights from the genome could help scale sustainable sugarcane conversion technologies for  … The reference genome of R570 is available on the JGI plant data portal,  Phytozome .   …
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Consensus statement from the first RdRp Summit: advancing RNA virus discovery at scale across communities
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FICUS Webinar: “Shining a Light: Advanced Photon Source Capabilities for FICUS Research”
… On February 8, 2024, the DOE Joint Genome Institute and the Environmental Molecular Sciences … to the FY2024 EMSL-JGI FICUS collaborative proposal call . Letters of Intent for the joint call are due March 7, 2024. The FICUS call … We work with start-ups and mature companies, as long as the data are not proprietary.  Q3: What are the acceptable …
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Fungal Friends or Foes in Plant Roots
… plant host health. The Science Researchers compared the genomes of fungi that colonize Arabidopsis thaliana roots … health and diversity, which can in turn boost yields for both food and for candidate bioenergy feedstock crops. … isolates from the collection. The team then compared this dataset against nearly 80 previously published fungal …
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Perspective on taxonomic classification of uncultivated viruses
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Genome-Based Taxonomic Classification of the Phylum Actinobacteria
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