Results

Genomic characterization of three marine fungi, including Emericellopsis atlantica sp. nov. with signatures of a generalist lifestyle and marine biomass degradation
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Genomics, Exometabolomics, and Metabolic Probing Reveal Conserved Proteolytic Metabolism of Thermoflexus hugenholtzii and Three Candidate Species From China and Japan
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Open Frameworks Training the Next Generation of Scientists
… Educational training technologies provide opportunities for students and professors alike The Science In  PLoS … involving academic faculty and researchers at the DOE Joint Genome Institute (JGI), a DOE Office of Science User … to connect educators and empower them to utilize program resources. MICROnet is  built around a community of …
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Ancient Algae Reveal Secrets of Plant Evolution
… of how plants adapted to terrestrial life paves the way for innovations in sustainable agriculture and clean energy. … varieties able to grow in marginal lands and with minimal resources. Enabling the use of non-arable land for biomass … Program of the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User …
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Coming-of-Age Characterization of Soil Viruses: A User’s Guide to Virus Isolation, Detection within Metagenomes, and Viromics
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Spacer2PAM: A computational framework to guide experimental determination of functional CRISPR-Cas system PAM sequences
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Viral dark matter and virus–host interactions resolved from publicly available microbial genomes
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Enriching public descriptions of marine phages using the Genomic Standards Consortium MIGS standard
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Jeremy Schmutz
… with the JGI dates back to 1997, when he was working for the Stanford Human Genome Center, now the HudsonAlpha Institute for Biotechnology. There he constructed the pipelines for directed finishing and co-led the team that … O., Lovell, J.T. et al.  2024.The complex polyploid genome architecture of sugarcane. Nature 628, 804–810. …
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A More Intuitive Phytozome Interface
… website. Since May 2019, v12 has not had any additional genomes added to it, nor had any feature updates. Phytozome  … of 250 plant genomes and has been under active development for over 5 years, provides users with the genome browsers, … systems. Trying to maintain v12’s codebase and legacy data resources and hardware, while also developing a modern and …
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… Across four forests, researchers have leveraged data from the 1000 Fungal Genomes project to form new connections between fungal … at the forest floor. For the first time, they compared three different fungal guilds in a range of different … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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You Can Move, But You Can’t Hide
… and spread from cell to cell. Two of the most common forms of MGEs are viruses and plasmids. They can be found in … Lead Nikos Kyrpides at the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility at … Berkeley National Laboratory (Berkeley Lab), with computing resources provided by NERSC, another user facility at …
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