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A Model System for Perennial Grasses
… Panicum hallii genomes offer insights to drought tolerance. The Science … access nutrients easily from a variety of soils and has a high tolerance of extreme water conditions such as drought and floods. The U.S. Department of Energy (DOE) supports research programs for developing methods for …
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acdc – Automated Contamination Detection and Confidence estimation for single-cell genome data
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Genomes OnLine Database (GOLD) v.6: data updates and feature enhancements
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Computationally Classifying Fungal Lifestyles
… Machine learning methods were applied on sequenced fungal genomes to classify gene families. The Science As a proof of … of fungi, by lifestyles. The machine “learned” to identify data generated in part through the 1000 Fungal Genomes … team to reclassify 25  Dothideomycetes species, and also provides more information about speciation events. …
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How Filamentous Fungi Sense Food
… researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … genes. This first paper integrating multi-omics data from this JGI fungal ENCODE proposal was  recently … to plant biomass. One of these techniques was DAP-seq, a high-throughput method for identifying protein binding sites …
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Genomic adaptations of the green alga Dunaliella salina to life under high salinity
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Genome diversity in Brachypodium distachyon: deep sequencing of highly diverse inbred lines
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High intraspecific genome diversity in the model arbuscular mycorrhizal symbiont Rhizophagus irregularis
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Abscisic acid supports colonization of Eucalyptus grandis roots by the mutualistic ectomycorrhizal fungus Pisolithus microcarpus
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Novel hot spring Thermoproteota support vertical inheritance of ammonia oxidation and carbon fixation in Nitrososphaeria
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Guidelines for public database submission of uncultivated virus genome sequences for taxonomic classification
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Cell-free styrene biosynthesis at high titers
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