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Integrating Experimentation with Data
…   Registration for this meeting has closed           Registration fees:                 … attendees: $500     Students: $200      Postdocs: $250     Industry: $700    Thanks for joining the Joint Genome Institute (JGI) and the Environmental … The JGI and EMSL are U.S. Department of Energy (DOE) Office of Science national scientific user …
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Olpidium, The Key to the Origin of Terrestrial Fungi
… Before 2006, Olpidium was one of the many obscure fungi of Chytridiomycota (the … Igor Grigoriev from the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … attracted the attention of many mycologists with the two publications of the kingdom-wide, multi-gene phylogeny of …
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Silver age of GOLD introduces new features
… The JGI’s Genomes OnLine Database celebrates 25 years as a vital resource for … sequencing projects carried out at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office … a broad range of activities from proposal intake to publication. Information is also obtained and cross-checked …
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How Filamentous Fungi Sense Food
… Tracing gene regulatory networks in the model fungus  Neurospora … . The Science A team led by researchers at the University of California, Berkeley used a multi-omics approach to … N. crassa is the model organism for filamentous fungi, all of which contain a wide array of plant cell-wall degrading …
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Data Ecosystem
… The JGI is leveraging its current partnerships to offer new capabilities and … is discoverable and accessible. Linking the resources of powerful institutions like the JGI, KBase, NCBI, NMDC, … to facilitate these efforts. Particular areas of emphasis will be the development of tools and …
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JGI Early Career Researchers Featured in mSystems Special Issue
… In a special issue of mSystems , out May 14, 2019, JGI researchers are among the authors who offer perspectives on what the next five years of innovation … rare microbes. The technique was applied to a recent Nature Communications paper, uncovering giant virus …
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The Mobilome in the Mire
… researchers have known that many datasets miss a key part of microbial genomes: the mobile genetic elements, or MGEs, that can move between organisms. But now, deep sequencing and new analysis methods are bringing this mobilome into light, and opening up new options …
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Taking Stock of the Known and Unknown Microbial Space
… diversity hotspots Over the past few decades, advancements in sequencing technologies have led to an abundance of microbial genomes becoming available to the global … in Science Advances , researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office …
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RECAP: Keynote Speakers Talk Innovation at 2022 JGI Annual Meeting
… The JGI was honored to host some of the brightest minds in genetics as part of our  2022 Annual Meeting . The meeting was a hybrid … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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Kjiersten Fagnan
… Kjiersten Fagnan began working with JGI in 2012 as a NERSC bioinformatics computing … worked closely with staff to understand the data-intensive nature of JGI workloads. Dr. Fagnan was appointed CIO of the JGI in … Kjiersten Fagnan is the JGI's Chief Informatics Officer. Click to learn more about how the JGI supports the …
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Designer DNA: JGI Helps Users Blaze New Biosynthetic Pathways
… A special issue of Synthetic Biology celebrates research enabled by the JGI DNA Synthesis Science Program. Fashioning DNA outside a cell is key to interrogating what genes … more than 10 papers, including two Nature Plants publications, in five years, have come out of the …
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
… A new view into a symbiosis could offer benefits to address climate … paper  is the cover article for the April 2024 issue  of  Nature Plants .  “We wanted to better understand the nature … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science …
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