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HT-SIP: a semi-automated stable isotope probing pipeline identifies cross-kingdom interactions in the hyphosphere of arbuscular mycorrhizal fungi
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The Genome of Naegleria gruberi Illuminates Early Eukaryotic Versatility
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Protocols
Find protocols provided by JGI and the JGI user community below for DNA preparation tools, high molecular-weight DNA extraction …
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Interdisciplinary delegation from the University of Duisburg-Essen explores collaborative opportunities with Lawrence Berkeley National Laboratory
A two-day kick-off meeting held at Lawrence Berkeley … a diverse range of topics related to structural biology, single cell and systems biology, omics, and big data science, …
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High-Throughput Single-Cell Transcriptome Profiling of Plant Cell Types
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Better Genome Editing for Bioenergy
A team has optimized a crucial part of CRISPR-Cas9 … tool that can help scientists engineer organisms for bioenergy applications. Cas9 needs guide RNA to lead it … bp) that directs the endonuclease where to cut, but these “single guide” RNAs (sgRNAs) can be faulty. Without a good …
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2024 Progress Report
The Integrative Genomics Building (IGB) seen above is home to the DOE … processed 13,700 metabolomics samples With our users, 247 publications were published   … Our primary objective is to … and omics, and we continue to develop new capabilities in single-cell sequencing, spatial transcriptomics, and cell- …
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JGI Early Career Researchers Featured in mSystems Special Issue
In a special issue of mSystems , out May 14, 2019, JGI … beyond the tried-and-true method of traditional shotgun metagenomics. One approach uses fluorescence-activated cell sorting (FACS) to sort cells into several small pools …
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Engagement Webinar: Accessing NEON’s Environmental Sample Archives, Applying JGI & EMSL Omics Tools
The  National Ecological Observatory Network (NEON) is a network … Through the  “Facilities Integrating Collaborations for User Science” (FICUS) call between the JGI and the  … Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy …
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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable … energy and environmental challenges.   Scanning the California oak woodlands from the air, large swaths of the … was released to the public in a highly-cited 2006 publication in the journal Science . This provided a …
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A Natural Mechanism Can Turbocharge Viral Evolution
Understanding how a fundamental mechanism of evolution allows … step in the deadly dance between a virus and microbial cell is an embrace. For a virus with a “head-tail” … by the JGI, to uncover these DGRs. DGRs were found in single microbial and viral genomes, as well as genomes …
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Crysten Blaby-Haas
Blaby-Haas joined the JGI in 2022 as lead of the Biomolecular … at Berkeley lab. She earned her PhD in Microbiology and Cell Science in 2011 from the University of Florida, working with Valérie de Crécy-Lagard on using comparative genomics to predict gene function in bacteria and leveraging … Google Scholar … Education … Awards and Service … Selected Publications …
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