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Expanding Horizons with the 2025 JGI-UC Merced Internship Cohort
… Interns contributed to a number of projects, from refining lab … has closed at the U.S. Department of Energy (DOE) Joint Genome Institute, a DOE Office of Science User … Basso, Heejung Cho Project:  Characterizing how resident phages shape their host phenotype Graduate interns Adeola …
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JGI@25: Mapping Switchgrass Traits with Common Gardens
… crop. In 2018, the JGI had sequenced and assembled the genomes of two varieties of a close relative and model … have also harnessed the switchgrass gardens for other projects. At the 2021 JGI Annual Meeting, David Lowry talked … a multi-year study his student conducted involving fungal rust pathogen resistance. Just as the common gardens have …
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A Grass Model to Help Improve Giant Miscanthus
… of polyploidy and perenniality. The Science A reference genome sequence and genomic toolkit for the perennial grass … chromosomes of Miscanthus arose by ancient hybridization (polyploidy) and insights into the dynamics of gene … stressors such as drought and temperatures. Summary Images of giant miscanthus often appear in discussions of …
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DAP-seq Drives Robust Mapping of Gene Regulation
… to technical limitations and the sheer complexity of plant genomes. Now, with improvements to DNA Affinity Purification … 10 species ranging from grasses to broccoli and trees like poplar, spanning about 150 million years of evolution,” said … robustness will enable researchers to propose multi-genome projects, opening new avenues for comparative regulatory …
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Jeremy Schmutz
… back to 1997, when he was working for the Stanford Human Genome Center, now the HudsonAlpha Institute for Biotechnology. There he constructed … 5, 16, and 19. Following the completion of the Human Genome Project in 2003, he developed sequencing, assembly, and …
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Examples: Successful LOIs & Submissions
… Program Large-Scale Call, as well as successful submissions to our CSP New Investigator, CSP Functional Genomics, and Facilities Integrating Collaborations for User Science calls. These documents have been shared … Elucidating Sphagnum microbiome genetic interactions for improved growth at elevated temperatures …
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Single Cell Research Group
… Research in the Woyke laboratory focuses on the utility of single-cell methods to access genetic material of uncultivated taxa of interest. One such effort is targeted at environmental cells that are from candidate phyla, major branches … in the strongly biased representation of sequenced genomes in the public domain, the bulk of which belong to …
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Fungal Friends or Foes in Plant Roots
… Uncovering associations between plant roots and fungi that can help or harm … plant host health. The Science Researchers compared the genomes of fungi that colonize Arabidopsis thaliana roots … on the fungal Tree of Life through the 1000 Fungal Genomes Project. Hacquard’s group had assembled a mycobiome culture …
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Statement on the Use of Genomics Data
… The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is committed to advancing the field … the benefit to society. Inspired by the Human Genome Project (HGP), and building upon the principles for open access in the field of genomics … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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Fishing for Novel Cellulose Degraders
… single-cell genomic approach to bioprospecting. The Science One of the most vital pieces of equipment for fly fishing is … by Tanja Woyke at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … of how function-driven genomics, which Woyke and her colleagues define as “any form of functional enrichment leading …
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Better Genome Editing for Bioenergy
… technology to enable improvements in microbial oil production. The Science CRISPR-Cas9 is a powerful, high-throughput … at a genetic level, how does  Y. lipolytica work? The project was a multi-institutional effort led by … included researchers at the U.S. Department of Energy Joint Genome Institute (JGI), a DOE Office of Science User …
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Webinar: MycoCosm Tutorial
… data portal , an interactive collection of sequenced fungal genomes, omics data and comparative analysis tools. … genomes and those external genomes that enable JGI CSP projects – please first contact us at [email protected] … have a lot of well characterized genes. Other groups, like rusts, have maybe up to 70% uncharacterized. We are working …
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