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Better Genome Editing for Bioenergy
… part of CRISPR-Cas9 technology to enable improvements in microbial oil production. The Science CRISPR-Cas9 is a powerful, high-throughput … goal of producing sustainable fuels from alternative sources. Moreover, the team says the approach they used to … . JW acknowledges additional support from the National Science Foundation Graduate Research Fellowship Program ( …
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Mapping the Earth’s Hidden Fungal Kingdom
… Leveraging massive comparative genomics to decode millions of mystery genes and lay a … past billion years, fungi have spread quietly throughout our planet. From the deepest ocean floors to Antarctic … (DOE) Joint Genome Institute (JGI)’s Fungal and Algal Science Program and JGI users have been at the forefront of …
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Fungal Friends or Foes in Plant Roots
… and fungi that can help or harm plant host health. The Science Researchers compared the genomes of fungi that … determine if these fungi act as friends or foes. The Impact Microbial communities comprised of fungi and bacteria can … of the key community participants and enabling future metagenomics studies.   …
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Searching for new branches on the tree of life
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From Competition to Cooperation
… symbiotic lifestyles across multiple fungal lineages. The Science By comparing 135 fungal sequenced genomes, … genomes of symbiotic species available: 73 saprotrophs and 62 mycorrhizal species. The 62 mycorrhizal species include 29 … will assist researchers in moving toward functional genomics studies to learn more about the inner workings of …
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High-resolution phylogenetic microbial community profiling
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Astrovirology: how viruses enhance our understanding of life in the Universe
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Simon Roux
… Dr. Roux joined the JGI in 2017 to lead viral genomics research as part of the Metagenome Program. His … focused around developing foundational knowledge of viral diversity and virus-host interactions in microbial systems. Through a 2021 DOE Early Career Research …
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The Power of One, Amplified
… single cell genomics complements metagenomics studies. The Science Researchers demonstrated the value of conducting … of bioinformatics tools for  extracting snippets of microbial genomes directly from environmental sequence data, … microbial populations. The work appeared in The ISME Journal . Members of the Dunfield lab collected samples from …
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JGI@25: Roots of a Mutualist Relationship
… revisited a number of notable achievements that showcase our collaborations and capabilities to enable great science that will help solve energy and environmental … with the poplar, a JGI Flagship Genome and the first tree to have its genome sequenced. Having this first genome …
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Soil virus offers insight into maintaining microorganisms
… identified a virus protein tied to carbon cycling.  The Science Through a collaborative effort, researchers have … to another, which can have a significant impact on the microbial communities within soil. Using metagenomics, … second only to cellulose.  Chitin is also a common food source for microbes living within soil. So, the chitosanase …
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Shattering Expectations: Novel Seed Dispersal Gene Found in Green Millet
… Survey of Setaria's natural diversity reveals seed dispersal in wild populations for the … (Toby) Kellogg and other researchers at the Danforth Plant Science Center (Danforth Center) drove up and down the … seed dispersal in wild populations for the first time.  “To our knowledge, nobody has ever discovered a dispersal gene …
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